Gene Tcr_2116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_2116 
Symbol 
ID3761297 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp2339197 
End bp2341197 
Gene Length2001 bp 
Protein Length666 aa 
Translation table11 
GC content45% 
IMG OID637786864 
Productcopper-resistance protein CopA 
Protein accessionYP_392379 
Protein GI78486454 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2132] Putative multicopper oxidases 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01480] copper-resistance protein, CopA family 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATACAT CAAATAAAAG CGTACAACCG CAACTGGGCC GACGCCAGTT TGTTAAAGGC 
ATTGCGTTAA GCACCATTTC AGCTGCCATA GGATCTCATC TGCCTTCAGC TTGGGCTAAA
GAAGAATTTT CAGCCATCGG CGCAGGGAAC TTGAACCCTA AACAGCCCGT TTTAATTGGA
CCTGAATTTG ATTTAACCAT TTCAGAAACG CCTGTCAACA TTACAGGTTC ACCTGTCAAA
GCAACCTTAA TCAACAACTC TTTACCCGCC CCAACATTGG TTTGGCGTGA GGGAGAGACT
GTAACCATTC GCGTAAAAAA TACTTTGTCG GTTGATACGT CCATTCACTG GCATGGCATT
ATTCTTCCCT TTCAAATGGA TGGTGTGCCG GGCTTAAGTT ATGACGGCAT CAAGCCTGGT
GAAACGTTCA CTTATCAATT TACTGTGCAG CAACATGGAA CCTATTGGTA TCACAGTCAC
TCCGAATTTC AGGAGCAAAC CGGATTGTAT GGAGCACTGG TTATTTTACC CAAAAAAGCA
GATCCACTGG ATTACGACCA TGATTTCGTG ATTCAGCTGT CAGACTGGTC AGACAGTGCG
CCCGATACCC TTTATTCAAA CATAAAGAAA ATGGGAGACT ATTACAATTA CAGCCAAAGA
ACGGTGGGTG ACTTTTGGCA TGAAGTCAAA ACCTACGGCT TCTCCAAAGC ATGGGAAAAA
CGGAAAATGT GGAACCAAAT GCGCATGACA GACCGTGATT TATCCGATGT CACGGGAGCA
ACCTATACCT ATTTAATGAA TGGACTGTCG CCTAAAGCGC ATTGGCGTAC CGTCATTGAA
TCAGGCAAAA AAGTGAGATT ACGATTTGTA AACAGCTCTG CAATGACTTT TTTTGATGTC
CGTATCCCGG GCTTAAAAAT GACAGTGGTT GCAGCAGATG GAAATTTAGT CCAACCGGTT
GAAATTGACG AATTCCGTAT TGGCGTTGCC GAAACTTATG ACGTCATTGT CGAACCGGAT
ACGTCGAAAC AGGCTTATGC AATTTTTGCA CAAGCAATTG ACCGCTCTGG CTTCGCTATG
GGTTCGATCA CATCGGATCC GACTCAATTA GCCGACTCGC CTGAAATGGA CCCTTTACCC
ATCTTAAGCA TGACCGATAT GGGCATGGAA ATGGACATGG GTTCCACGTC ACACCCAATG
AATATGGATG GTGAAATGGA AGGAATGAAC CCTTCATCTC AACCAATGAA CATGAATACT
GACTCCCAGC GTATGACACC TTCTGATCAT AATTCGATGA ATGGAACGAA GCATGATATG
AGTTCCATGC AACAACAAGA CTATGGCCAT GCTTTGGCTA TGGAGAAAAG CCAAATGGGG
AAGGATGTCA GCAATGTTGA CCATTCCAAG CATTCTCATG GCATGGAGAA CATGAACGTG
AATCTGGATG ACATTACGAT TCCGATGGAT ATGAATCCTC AGTTACCTCA AATCAAAACA
CCTTCAGCAG AAGGTGCTCA AATTGGTATG AGAGCCATGG CTCCTCAATA TAGGCTGGAT
GATCCAGGAG TTGGACTGAG AGAAAATGGT CGGAAGGTTT TGACATATGC CGACTTAAAA
AACCGCTTCC CGACCCGACA TCATCCGAAA CCGACCAAGG AACTGGTTAT GCACTTGACC
GGAAATATGG AACGCTACAT GTGGTCGATA AATGGCATTC CTTTTGAGGA GGCCGAACCT
CTTAACTTTC AATACGGTGA TCGAGTGCGT ATTACCTTTA TTAATGACAC GATGATGAAT
CACCCTATGC ACCTTCATGG CGTTTGGAGC GACCTTGAAA CGGGCGATGA AAACCATATT
CCCCGCAAGC ACACGGTCAT TGTCCAACCC GGCTCTAAAA TAAGTTATCG AGTCACCATG
GACGCCAAAG GCGACTGGGC TTATCACTGT CATTTGCTTT ATCACATGAT GGGCATGTTC
AGAAAAGTAC AAATCCGATA A
 
Protein sequence
MNTSNKSVQP QLGRRQFVKG IALSTISAAI GSHLPSAWAK EEFSAIGAGN LNPKQPVLIG 
PEFDLTISET PVNITGSPVK ATLINNSLPA PTLVWREGET VTIRVKNTLS VDTSIHWHGI
ILPFQMDGVP GLSYDGIKPG ETFTYQFTVQ QHGTYWYHSH SEFQEQTGLY GALVILPKKA
DPLDYDHDFV IQLSDWSDSA PDTLYSNIKK MGDYYNYSQR TVGDFWHEVK TYGFSKAWEK
RKMWNQMRMT DRDLSDVTGA TYTYLMNGLS PKAHWRTVIE SGKKVRLRFV NSSAMTFFDV
RIPGLKMTVV AADGNLVQPV EIDEFRIGVA ETYDVIVEPD TSKQAYAIFA QAIDRSGFAM
GSITSDPTQL ADSPEMDPLP ILSMTDMGME MDMGSTSHPM NMDGEMEGMN PSSQPMNMNT
DSQRMTPSDH NSMNGTKHDM SSMQQQDYGH ALAMEKSQMG KDVSNVDHSK HSHGMENMNV
NLDDITIPMD MNPQLPQIKT PSAEGAQIGM RAMAPQYRLD DPGVGLRENG RKVLTYADLK
NRFPTRHHPK PTKELVMHLT GNMERYMWSI NGIPFEEAEP LNFQYGDRVR ITFINDTMMN
HPMHLHGVWS DLETGDENHI PRKHTVIVQP GSKISYRVTM DAKGDWAYHC HLLYHMMGMF
RKVQIR