| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_2048 |
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| Symbol | |
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| ID | 3761965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 2259549 |
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| End bp | 2261564 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637786797 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_392312 |
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| Protein GI | 78486387 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.127113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGCGTA AACTCAGCAT CAAAGTACAA CTGATGATTT GGATTTCTGC TGTGACGTTT
ATGATTGCGT TCGGTTCTTT AGGCATTGCG TTCTGGTTGG ATGTCAAACA ACGGGAAACA
TTGGCGGCGA GTTTATCAAC CACTGTTAAC TCCGCTTTAC GTCATGATTT ATTGAAAGGC
ATTCTATCGA ATGATGCCAG TGTCTATTCC GATCTCAGTT TTCGTTTGGC CGGGTTTCAG
CAAATCGACC GTGTTTTATT ACTGAACGAT CAAAACAAAC CGGTGTTTAA TTACTTACAC
ACGAACAAAA CCTATCAAAA TTTAGTCGAC CGTAGCACCG AAACCCCACA ATTTCATGGC
GAAGATTTAT TTGTTAAACA CCCATTGATT GAAGATGGTT ATCAATATGG TTCGGCGGTT
TATGTCATCG ACATGATGTC TTTCTCAACG CAATTCGAAA AGCACTTAAT CTTTTTATTC
ATCGCTTTGC CGTTGGAGTT ATTGCTGGCG CTGCTCTTTA CCTGGTGGAT CAGTCGCAGC
TACAACCAAC CGTTCACTCA GTTAGTTGAA GCGATGAAAC ATAATGACGT CGGCTTAAAT
CAATTTTCTC CGGTGCATAC CGATGCTAAA AATGAAATCG GGGCGCTCTT TAGTGGCTAT
AACGAAATGA TTCATAAAGT GGAAGCCACC ACAGAGCAAA TGCGATATCT TTCCGAACAT
GATGATTTAA CGGGGCTTTA CAACCGTTAT TACATTGAGC TACTGATTCA AAAAGCCCTG
CAAGATGAAA CCGCCCAACA TCATGTGCTA CTGAACATCG ATTTGGATCA ATTCAAACTG
ATTAATGATG CGGCGGGACA CAGTGCCGGA GATGAATTGT TGAAAATGGT GGCTCATAGC
TGTCAGGACA TGTTGCCAGA CAGTGTTTCC ATGGCTCGCA TTGGCGGTGA TGACTTTTAT
ATCTTGCTGC CCAACCACTC TGAAAAAATT GGTAAGGCCA TTGCCGAAAC GTTACTGGAA
CACCTATCCG ATTTTCGATT CAGCTGGGAA GGGCAAGCCT ATTCGGTGTC CGCTTCCATT
GGCATGGTTG CGTTCAAACC TTTTGAATAC ACCTTGGAAG AGCTTGTCAA AGCAGCAGAT
TCAGCCTTTT ACTCCGCCAA ATCTGCCGGG CGCAATAAAC TCCATATTTT CCATTCGGAA
GATGAAGAGT CTCAATATTA TAAACATGAA GTGCAAATCG CCAGCTACAT TAAAGAAGCC
TTGGCACAAG GGGCGTCACC AACGCCATCC AAAAACACGG CTTATTTTGA ACTGTTTGCA
CAAGGCATTA CCCCGTTACA ACATAACAAC CGCGATGAAG TAAGTTATGA AATCTTAATC
CGTTTACGCG ATGTGAAAGG TAACCTGATT GCACCGGATG CGTTTTTACC GACCGCAGAA
CGTTACCAAA TGATGGCCGA CATCGATGGC TTCGTGCTCA CTCAGTACTT AAACAGGGTG
CAATCGTTAC CAACCCACTT AACCAAGTTG CATAAAGCTC ATATCAACTT GGCGGGCTCC
AGTTTGAATA ACGCCGATTT CCAGGCTCGC TTAAAACAAT TGGTGAGTGA ACACCCCCAT
TTTCCATGGC GTAAGCTGGA GTTGGAAATC ACTGAAACCT CTGCTGTGGG GAACTTCAAT
CAAGCGATGC CGTTTATTCA ATATTGCCAG GCATTAGGCA TTGGGCTGGC TCTAGATGAC
TTTGGGACCG GCATGTCTTC TTTTGAATAT CTGAAAAGCC TTCCTTTTGA TGTAATTAAA
ATAGACGGCA GTTTTGTGAA AGACATGCAT TCGGATCCCA GCGACAAAGC CGTCATTCGC
TATATTCAAG AAATCAGCGC GTTAAGAAAC CAGGAAACGG TTGCCGAATA TGTGGAAACG
CAGGAAGATG TGGATGTCTT AACCGAAATT GGGATTACTT ATGGCCAAGG GTATTTTTTA
GGTCGTCCTA AACCCCTTAC AGAATGGTTG ACTTAA
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| Protein sequence | MWRKLSIKVQ LMIWISAVTF MIAFGSLGIA FWLDVKQRET LAASLSTTVN SALRHDLLKG
ILSNDASVYS DLSFRLAGFQ QIDRVLLLND QNKPVFNYLH TNKTYQNLVD RSTETPQFHG
EDLFVKHPLI EDGYQYGSAV YVIDMMSFST QFEKHLIFLF IALPLELLLA LLFTWWISRS
YNQPFTQLVE AMKHNDVGLN QFSPVHTDAK NEIGALFSGY NEMIHKVEAT TEQMRYLSEH
DDLTGLYNRY YIELLIQKAL QDETAQHHVL LNIDLDQFKL INDAAGHSAG DELLKMVAHS
CQDMLPDSVS MARIGGDDFY ILLPNHSEKI GKAIAETLLE HLSDFRFSWE GQAYSVSASI
GMVAFKPFEY TLEELVKAAD SAFYSAKSAG RNKLHIFHSE DEESQYYKHE VQIASYIKEA
LAQGASPTPS KNTAYFELFA QGITPLQHNN RDEVSYEILI RLRDVKGNLI APDAFLPTAE
RYQMMADIDG FVLTQYLNRV QSLPTHLTKL HKAHINLAGS SLNNADFQAR LKQLVSEHPH
FPWRKLELEI TETSAVGNFN QAMPFIQYCQ ALGIGLALDD FGTGMSSFEY LKSLPFDVIK
IDGSFVKDMH SDPSDKAVIR YIQEISALRN QETVAEYVET QEDVDVLTEI GITYGQGYFL
GRPKPLTEWL T
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