| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_2029 |
|---|
| Symbol | |
|---|
| ID | 3761758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 2239487 |
|---|
| End bp | 2241277 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637786778 |
|---|
| Product | succinate dehydrogenase, flavoprotein subunit |
|---|
| Protein accession | YP_392293 |
|---|
| Protein GI | 78486368 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.21 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTCAT TAGACAGTGT GGATACCTTT CATTTTGACG CCATTATCAT TGGTGCGGGC
GGCGCAGGGT TGAGAGCGGC GTTGCAGTTG GCCAAATCCG ATCAGCGAGT GGCCGTGGTA
TCCAAAGTGT TTCCAACACG CTCACATACC GTGGCAGCGC AAGGTGGGAT TAATGCTGCG
TTAGGAAACT TAACCGAAGA CAACTGGCAT TGGCATATGT ATGACACCAT CAAGGGCAGC
GACTATCTTG GAGATCAGGA TGCGATTGAA TTCATGTGTC GAGAAGCCTC GGAAATCGTA
CGAGAGTTAG AACATTTTGG GGTGCCGTTT TCTCGAACCG AACAAGGCAA AATTTATCAA
CGCCCGTTTG GCGGACAAAG CCAAAATTTT GGGGAAAGTC AAGCCACGCG AACTTGCGCC
GCCGCCGATC GTACCGGACA TGCGATTTTA CACACCCTCT ATCAGCAAAA TCTTCAGGCT
GGAACCACTT TTTTCGATGA ATATTTCGCC ATTGATCTGG TGAAAGATGA GTTGGGTCAC
ATCGGTGGTA TGGTGGTGAT GAATATTCAA ACCGGACAGT ATCAATTGTT GCGAGCACAT
GCCGTGATGA TGGCAACAGG CGGTGCCTGT CAGTTGTTTA AAACCAATAC CAATGCCAAG
ATCAACACCG GCGATGGGCT GGCCATGGTA TTGCGTGCCG GGTTGCCGTT GCAGGATATG
GAATTCTGGC AATTCCACCC CACCGGGGTC GCAGATAAAG GGATGTTGTT GTCGGAAGCG
GCGAGGGGCG AGGGCGGTGT GTTGCGCAAT GGTAACGGCG AAGCGTTTAT GGTGAAATAC
GCCCCGCATG TGAAAGACTT GGCGTCTCGT GACGTCGTGT CTCGTGCCAT TGCCGTTGAA
GTTAAAGAAG GGCGGGGGTG TGGACCGAAT AAAGACTATG TGCTGCTTGA TTTAACCCAT
CTGGATGCTG AGGTCATTAA GAAGCGGTTA CCCGGTATTC GAGAAATTGG TCTGACCTTT
ATGGGGTTGG ATATGTGTAT CGATCCGATT CCGGTCTATC CCACGGCGCA CTATATGATG
GGCGGCATTC CCACCAATTT TAACGGTCAG GTGGTGACTT TGGATGACAG CGGCCAATCC
ATCACCGTGC CCGGTCTTTA TGCCGTGGGT GAATGCGCGT GTGTGTCGGT GCATGGTGCA
AACCGATTGG GCGGGAATTC TTTGTTGGAT ATCGTGGTGT TTGGTCGCGC GGCGGCCAGT
GAAATTGAGC GCATTCTCAA GCTACAAAAA CCGGCCAGTT TTTTTGATAA AGCCTTAGAT
TTATCGTCGG TCGAAGCGCG TTTGAATAAA TGGGAAGCCA AGCCTGATGC CAATGCTCAA
GCCGAATCAA CTGCTCAAAT CAAACGCGAT TTACAACGGG TGATGCAAGA AGGTTGTGGC
GTTTTCCGGA ATCAGGAATC GATGTCGACC TTGATTGAGC AGCTGGAACC GATCCAAAAA
CGAATCGATC AGGCAGTGTT GCAAGACCAT AGCCATGCTT TCAACTTAGA ACGGCTGGAA
GCGTTTGAGT TGGAAAACCT GATGACGCTG GCGTATGCCA CGGTGCATTC GGCCATTGAG
CGACAAGAAA GTCGTGGTGC GCACTCAAGG GTCGATTTTC CACAACGCGA TGACGAAAAC
TGGTTACAAC ACAGTTTGTA CTTTCCACAA GACCATCAGT TACGTTATAA ACCGGTTTGT
TTAACGCCTT TAACCGTGCC AGGGTTTGAA CCCAAGGCGC GCGTATATTA A
|
|---|
| Protein sequence | MVSLDSVDTF HFDAIIIGAG GAGLRAALQL AKSDQRVAVV SKVFPTRSHT VAAQGGINAA
LGNLTEDNWH WHMYDTIKGS DYLGDQDAIE FMCREASEIV RELEHFGVPF SRTEQGKIYQ
RPFGGQSQNF GESQATRTCA AADRTGHAIL HTLYQQNLQA GTTFFDEYFA IDLVKDELGH
IGGMVVMNIQ TGQYQLLRAH AVMMATGGAC QLFKTNTNAK INTGDGLAMV LRAGLPLQDM
EFWQFHPTGV ADKGMLLSEA ARGEGGVLRN GNGEAFMVKY APHVKDLASR DVVSRAIAVE
VKEGRGCGPN KDYVLLDLTH LDAEVIKKRL PGIREIGLTF MGLDMCIDPI PVYPTAHYMM
GGIPTNFNGQ VVTLDDSGQS ITVPGLYAVG ECACVSVHGA NRLGGNSLLD IVVFGRAAAS
EIERILKLQK PASFFDKALD LSSVEARLNK WEAKPDANAQ AESTAQIKRD LQRVMQEGCG
VFRNQESMST LIEQLEPIQK RIDQAVLQDH SHAFNLERLE AFELENLMTL AYATVHSAIE
RQESRGAHSR VDFPQRDDEN WLQHSLYFPQ DHQLRYKPVC LTPLTVPGFE PKARVY
|
|---|
| |