Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_2024 |
Symbol | |
ID | 3761753 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 2234317 |
End bp | 2236314 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637786773 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_392288 |
Protein GI | 78486363 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTTCGA TTCGTTACTT TTTTGTGATT GCTTTAGTCA CAATCATTAC CGTTTTTTAT GGTGTGTTTT TTTATTATTA CCTTGATGAC GAACAAAAAA AGGCCGACCT GATTGTTGAA AGCATTCGGC ACGATTTGTC TGAAACCGCT TATGTTATTT CCAGTGAAGT GAAAGCACCT GAATCGATTC GATCTTTTAA ATCGTTTTTA CACAGGAAAG TGGCCAACAA CCCACTTATT TCAGCGTTGG TCGTCGGCTA TGAAAACAAA GTGATTCTGA CAACGGATCC TTCAATTCAA TCTTTACCGA CCGATCTGGC GATACAAAAA AAGCTCATGT CTCTGACGCC TAATGCATTA AAACAGCATC CAATTTTTGA AATGGATATT AATTTTTTTA TCCAAGACAA GCCATCTTAT TTAAATCTTT ATCTCTATGT GGATCAGACT TATATTCAAA AATATTTTGC GGAAAGCCAA CACAATTTCT TTCTGTTTTT CGGCCTGGTT CCTTTCTTAA TGCTGATGTT ATTATGGTTT GTGTTAAGAA AATACGTTAC CTCTCCGCTT GAATTCTTGC GCCAGTATGC CTACTACCAG TCAAACGTTC CATCCAAATT CAAATTACGT GAACTGGAAT ATATACGTTC GTCCATGGTG CAAACATTCG ACCGTTTAGA CAACGAAAAA AATGAATTGT ACCGTCAGGC ACGAACCGAT AATTTATCGG GCTTGGCCAA CCGTAATCAT TTGAATGAAC GTATCAACTG GTTAATTTCA GAATATTCGC GAACAGGACA GGAATTTGCG GTGCTGTTCA TGGACTTGGA TAACTTTAAA ACGGTTAACG ATATGCTGGG CCATGAAGTG GGAGATAATT TATTAAAAAA TGTTTCGACC ATTATTCAAG AAGTGCTGCG TGATTACGAC ATCATCGCCC GTGTTGGCGG AGACGAATTC GTCATTGTTT TGAACTATTA TCAGTCCAAC TTCGAACTTA CCCATGTCAT TAATCGCATT CTGGATCGAA TCAGTGAGGT TCACATGGTG GATTCACATC CGGTAAAAGT GTCCGCCAGT ATTGGTATTG TGTGCTTTCC AAAAGACGGT GACAATATCA GCACCTTGAT GAAGAATGCG GATATTGCGA TGTACGAGGC TAAGAATTCC GGTAAAAATC GTTTTAAGTT CTTTACCGAA TCGTTGCACA AGCAAGTCAT CGGTGAGATT CAGCTGGAAC AAGACATGCA ACGTGCTCTC AAAAACAATG AATTTGAATT ATACTTCCAG CCTAAAATTT GCGTGAACGA TGGAAGCGTT GTCGGAGCAG AAGCATTGGT GCGTTGGAAC GATCCCAAAA AAGGGCTTGT TCCGCCGAAT GATTTCATTC CCGCCGCTGA AAAAACCGGC TTAATGGTTC CTTTAGGCCA CTGGGTATTA AAAACAGCCA TTCAACAACA GGTGACATGG AAAGAGCAAG GACTGGCTGA TTTACAAATC TCAATAAATT TATCGCCCGT TCAATTGCTG GACACATTAT TCGATCGTAA GCTTCAGGCG CTCATCAACC AATCGGGAGT GGACCCGACA AAACTCGATA TCGAGATGAC GGAATCGCAG TTTATGGAAA ACACAGAACA AAACCTGCAC AGCCTTTCGA CCATGCGTAA GCAAGGCATC AACATTTCAT TGGATGATTT TGGAACGGGC TATTCGTCAT TGGCTTATTT GAAAAAATTT CCGATTGATA CGTTAAAAAT TGATAAAACA TTTATTGACG ATTACGCCAC AGAATCCGGC GCTATTTTTA TCGAGACCAT TGTCAAAATT GCCCACACAC TGAACCTGAA TGTCGTTGCA GAAGGGATTG AACAGGAAGC ACAATTGAAC TATCTGGTTC AAACAGGGTG TGAAACCTAT CAAGGTTACT ACTGTTCCGC TCCCCTTCCT GTCAGCGAAT TTGAAGCTTT TCTTAAAAGC CGCACACCGG TTAAATAA
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Protein sequence | MLSIRYFFVI ALVTIITVFY GVFFYYYLDD EQKKADLIVE SIRHDLSETA YVISSEVKAP ESIRSFKSFL HRKVANNPLI SALVVGYENK VILTTDPSIQ SLPTDLAIQK KLMSLTPNAL KQHPIFEMDI NFFIQDKPSY LNLYLYVDQT YIQKYFAESQ HNFFLFFGLV PFLMLMLLWF VLRKYVTSPL EFLRQYAYYQ SNVPSKFKLR ELEYIRSSMV QTFDRLDNEK NELYRQARTD NLSGLANRNH LNERINWLIS EYSRTGQEFA VLFMDLDNFK TVNDMLGHEV GDNLLKNVST IIQEVLRDYD IIARVGGDEF VIVLNYYQSN FELTHVINRI LDRISEVHMV DSHPVKVSAS IGIVCFPKDG DNISTLMKNA DIAMYEAKNS GKNRFKFFTE SLHKQVIGEI QLEQDMQRAL KNNEFELYFQ PKICVNDGSV VGAEALVRWN DPKKGLVPPN DFIPAAEKTG LMVPLGHWVL KTAIQQQVTW KEQGLADLQI SINLSPVQLL DTLFDRKLQA LINQSGVDPT KLDIEMTESQ FMENTEQNLH SLSTMRKQGI NISLDDFGTG YSSLAYLKKF PIDTLKIDKT FIDDYATESG AIFIETIVKI AHTLNLNVVA EGIEQEAQLN YLVQTGCETY QGYYCSAPLP VSEFEAFLKS RTPVK
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