| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_2001 |
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| Symbol | |
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| ID | 3762313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 2203843 |
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| End bp | 2204970 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637786750 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_392265 |
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| Protein GI | 78486340 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.167131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGATG TTGTTTTGAA GTGGCGCGGG CATTACGCCT GGCTGCTGTT GATCACCAGT
GCGGTGCTTG CTGAAGAGTC GAAGCCTGTT ACCGCTCTTT CTTCTAAGTC GCAAGCCGTT
CCTGTCATCG CCTACAGTGT GAAACCCGTT AAAATCCCTG TAAATATTGA GGTATTAGGC
AGGCTTCATG CCAAAGAGTC GGTCGACATT ACCGCCAATG TGACGGAGAT TGTTCAAGCC
ATTCATTTTA AGGACGGTGA AAAGGTTCGC AAAAGTCAGT TGCTGGTGGA ATTGAATTCG
CAAGAAGAGT TGGCCTTGTT GGAAGAAGCG AAAGAGGCGA CCGAGGAAGC GAAGCGTCAA
TATGACCGAG TCAAAGAAAT TGAAGGGCGG GGATCGGTTA CCCGTTCTTT AATTGATGAA
CGTTATCGTT TGTGGAAGAC CACTGAAGCA AAACGAAAAG TGATTCAAGC ACAGTTGGCG
GATAGACGCC TTTACGCCCC GTTTTCCGGC CAAGTCGGGT TCCGCCAGTT GAGTGTGGGG
GCTTTGGTGC AAGCCGGAAC GAAAATTGTC AGCTTGGATG ACACCAGTCA AATGAAGTTG
GATTTGTTAC TTCCAAGCCA GTATTTATCC AATTTAAAGA TTGGTCAGGC GGTTGAGATT
GAAACGGCGT CTTATCCGGG GCGTCGCTTT AAAGGTGTGT TACGCGCCAT TTCCCCGCGT
GTTGAAGCGA ATTTGCACAT GATACAGGCC AGAGCACTCA TTGCGAACCC GAAAGCGGAA
TTGAAAACCA ACATGATGGT TCAAGCTTTT TTGCATTTGC CGCCGCAAGC CAAATTAATG
ATTCCCAACA GTGCCATTTT AATGTTGGGT GACCGTCAAT TTATCTACCG GCTAAAGCCT
TCCGATGCCT CTGGAATTTA CCAGTTAGAA AAAGTAGAAA TTGAAACCGG CGACAGAAAA
GCCAAACTGA CTCAAATATT AAAAGGGCTT CAGGAAGGTG ATCTCATTGT CAGTCAGGGG
TTGATGCGAA TTTCGTTGAG AAAACCTGTG CGTATTAAAG CGATGCAATC CGGGCAGCCT
CAAGACGTGC TGCTCAAGAA AGCCGTACCT CAAAGAGAGA CGCCTTAA
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| Protein sequence | MLDVVLKWRG HYAWLLLITS AVLAEESKPV TALSSKSQAV PVIAYSVKPV KIPVNIEVLG
RLHAKESVDI TANVTEIVQA IHFKDGEKVR KSQLLVELNS QEELALLEEA KEATEEAKRQ
YDRVKEIEGR GSVTRSLIDE RYRLWKTTEA KRKVIQAQLA DRRLYAPFSG QVGFRQLSVG
ALVQAGTKIV SLDDTSQMKL DLLLPSQYLS NLKIGQAVEI ETASYPGRRF KGVLRAISPR
VEANLHMIQA RALIANPKAE LKTNMMVQAF LHLPPQAKLM IPNSAILMLG DRQFIYRLKP
SDASGIYQLE KVEIETGDRK AKLTQILKGL QEGDLIVSQG LMRISLRKPV RIKAMQSGQP
QDVLLKKAVP QRETP
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