| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_2000 |
|---|
| Symbol | |
|---|
| ID | 3762312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 2200757 |
|---|
| End bp | 2203843 |
|---|
| Gene Length | 3087 bp |
|---|
| Protein Length | 1028 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637786749 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_392264 |
|---|
| Protein GI | 78486339 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTTGT CTGATACGTC GATAAAACGC CCGGTTTTAG CGACCGTAGC GTCTTTGCTG
TTGGTGGCCT TTGGTTTGAT GGCTTTTGAT CGCATGAGTT TGCGTGAATA CCCAAACGTT
GATCCGCCTG TCATTTCAAT AGAAACGACC TATTTAGGCG CTTCTGCGGA GGTAGTTGAA
AGTCGGATAA CCAAGCAGAT TGAGGACCGA ATTGCAGGGG TTTCAGGGAT TGAGTATATC
TCTTCTCAGT CCACAGATGG ACGATCGAAC ATTACCGTGG AGTTCAGCAT TAATCGAGAT
ATTGATGCCG CGGCCAATGA TATCCGAGAC CGAGTTTCCC GTATTGCCAA TAACTTGCCT
GTCGCGGCCG ATGCACCGGT GATTGAAAAA GCGGATGGCG ATGACAGTCC CATCATTTGG
TTTAATCTGG CCAGTGATCG TATGACCATT CCGGAGCTGA CCGATTTTGC CGAACGGTAT
ATTGTGGATC GTTTTTCTGT GCTGGACGGG GTGGCTCGTG TACGGGTCGG CGGGGGACAA
TCGTTTGCAC TGCGTGTTTG GCTCAACCCG CAAAAACTTG CACTTTACGG CCTTTCGCCC
ACCCAGATTG AAAATCAGAT TCGTGCTTCA AACATTGAGT TGCCTGTGGG GTCTCTCCAA
GGTGATGATG TGATGTTGAC GCTGCAGGCA GAAAAGCCGC TTCAAAGCGT TGACGATTTT
AAACAACTGG TCATCAAGCA AGATAAACAA ATTGGCCAAA TCACCTTGGG GGATGTGGCC
CAAGTACAGA TGGGGGCGAT AGAACGCCGC CGTTTCTTTA AGGGTAATGG CATGCCGATG
GTCGGGATTG GCATCATCAA GCAGTCTAAT GCCAATACCT TGACGGTGGC AGATCTGGCG
AATCAACGTA AGGATTTGAT TAACCAAACG TTGCCAGATA ATTTGAATTT AGAAGACAGT
TATGATGCAT CTGTTTTTGT TCATCAAGCA GTGAATGAAG TCTTTAAGAC CCTGTTTATC
GCATTAGGTT TAGTCGTATT GGTGATGCTG GTGTTTTTGA AAAACGTTCG TGCGGCTTTA
GTGCCAGCTG TCACATTGCC GGTTTCGTTA ATCGCCACTT TTTGGGTATT GTGGATGTTA
GGCTTTTCGG TCAATTTGTT GACCCTTTTG GCCTTGGTGC TGGCCATTGG ATTGGTGGTG
GACGATGCCA TAGTGGTGCT TGAAAACACA CAACGACATT TAGACATGGG GAATAAACCG
ATTGCCGCCG CGTACCTTGG CACCCGGCAA GTCGGGTTTG CCGTCATTGC GACCACGGTG
GTGTTGGTCG CTGTTTTTTT ACCGATTGGG TTTCTAGAAG GTAGCGTGGG GCGGCTGTTC
TCAGAGTTTG CCATTACCTT AGCCGTGGCG GTGCTTTTTT CCAGCTGGGT GGCTTTAACT
TTGTCTCCTG CGCTGGCTTC CAATATTCTA TCGGCCTCTA AAACAACGCC TGCAAGCCGC
CCTCGAAAAC ATCATCCAAC GCATAGATTT AAAAAGTTAC TGGTTAAAAA TTTACGTCAC
CCGATTTGGG TTGTGTTAAT TTTTTTGGGT GTGGTGGCCT CCATGGTTTT CTTTTCACAG
AAAGTCCCGC AAGAGTATGT GCCAAAAGAA GATCGAGGTG TTTTCTTTGT GATGGTCAAA
GGGCCCGAAG GGGCAACATT TGATTACATG CAAAGTTATA TGAATGAAAT TGAAAGTCGA
TTGATGCCGT TAGTGGAAAA AGGTGAAGTG AAGCGTTTGA TTGTTAGAGC GCCGCGCTCA
TTCGGATCCG GTGAGGTGTT TAATTCAGGC TTTGTCATTG TGGTGCTAGA CGATTGGGCG
CAGCGACGAT CCGGTTTTGA CATCATGCGT TCGGTTCGAA AAGATCTAGC AGACCTTTCC
GGTGTGAAAG CCTTTCCTGT GATGCGGTCA AGTATCGGGG GGCGTATTCA AAAACCGGTG
CAGTTTGTGA TAGGCGGGCC GAGTTATAAC GCATTGGAAC AGTGGAAAGA ATTGATGGAT
CAAGCGATTG AGAAAACCAA TCCGGGGCTA AATAGTTTGG ATTGGGATTA TGAACCCAGT
AAGCCACAAC TCAGACTTAA GGTGGATTAT GCCAGAGCTC GCGCGTTGGG GATTTCTCAT
CAAGACATTA CGGAAACGCT GCAGATTTTA CTTGGCTCAA AAAAAGTGAC TACGTTTCAA
TATGACGGGG AAGAATATGA CATTCTTCTC AAAGCCGATC CCAAATGGTT TAAGACACCA
GATGACCTGA ACCAAATTTA TCTCAATGCG GATGGGACTG AACAGATGAT TCCTTTGTCG
AGTCTGGTTT CGATGAGCGA AGATGCTACG GCGTCCAGTC TGAATCGTTA TAACCGAGTA
CGCGCCATTA CCCTATCCGC TAAACTAGAA GATCACCTAT CGTTAGGCCA GGCTTTAAGC
TATTTGAACG ATTTGACGCG AAAGACGCTT CCTGAAGAAG CCACCATTGA TTACAAAGGA
CAGTCCAAAG AATTTCAGAC GGCGACCAGT TCGCTTTACT GGGTCTTTTT ATTTGGCGGA
TTGGTGGTCT TTTTGGTGTT GGCAGCACAA TTTGAAAGCT TTATTCAGCC GTTTGTGATT
ATGTTGACGG TTCCGTTGGC GTTTGCAGGG GGCATTTTTG CTTTGTTGTT TTATGGCTTG
AGTCTTAATA TTTACAGTCA GATCGCATTG ATTATGTTGC TTGGTTTAGC GACTAAAAAT
GGGATTTTAA TCGTTGAATT CACAAACCAA TTACGGGATA AAGGGTTGCC GGTTTACCAT
GCTTTGGTGT CGGCCACACA CTTGCGATTA CGACCGATTG TGATGACGGC ATTTACGACC
TGTGCAGGAA CCATTCCGTT GATATTTTCT GAGGGAGCGG GGGCTGAAAC TCGTCAAATT
TTAGGGTATG TGTTGTTGTG GGGCGTGGCG TTTTCAACAC TGTTGAGTTT GTTTGTGGTG
CCGGTGGCTT ATGCGTTGGT GGCAAAAAAT ACCGGTTCAC CACAAGCTAA AACAGATGCC
CTTAAGCGGG CATTGTCTGA GTCATGA
|
|---|
| Protein sequence | MWLSDTSIKR PVLATVASLL LVAFGLMAFD RMSLREYPNV DPPVISIETT YLGASAEVVE
SRITKQIEDR IAGVSGIEYI SSQSTDGRSN ITVEFSINRD IDAAANDIRD RVSRIANNLP
VAADAPVIEK ADGDDSPIIW FNLASDRMTI PELTDFAERY IVDRFSVLDG VARVRVGGGQ
SFALRVWLNP QKLALYGLSP TQIENQIRAS NIELPVGSLQ GDDVMLTLQA EKPLQSVDDF
KQLVIKQDKQ IGQITLGDVA QVQMGAIERR RFFKGNGMPM VGIGIIKQSN ANTLTVADLA
NQRKDLINQT LPDNLNLEDS YDASVFVHQA VNEVFKTLFI ALGLVVLVML VFLKNVRAAL
VPAVTLPVSL IATFWVLWML GFSVNLLTLL ALVLAIGLVV DDAIVVLENT QRHLDMGNKP
IAAAYLGTRQ VGFAVIATTV VLVAVFLPIG FLEGSVGRLF SEFAITLAVA VLFSSWVALT
LSPALASNIL SASKTTPASR PRKHHPTHRF KKLLVKNLRH PIWVVLIFLG VVASMVFFSQ
KVPQEYVPKE DRGVFFVMVK GPEGATFDYM QSYMNEIESR LMPLVEKGEV KRLIVRAPRS
FGSGEVFNSG FVIVVLDDWA QRRSGFDIMR SVRKDLADLS GVKAFPVMRS SIGGRIQKPV
QFVIGGPSYN ALEQWKELMD QAIEKTNPGL NSLDWDYEPS KPQLRLKVDY ARARALGISH
QDITETLQIL LGSKKVTTFQ YDGEEYDILL KADPKWFKTP DDLNQIYLNA DGTEQMIPLS
SLVSMSEDAT ASSLNRYNRV RAITLSAKLE DHLSLGQALS YLNDLTRKTL PEEATIDYKG
QSKEFQTATS SLYWVFLFGG LVVFLVLAAQ FESFIQPFVI MLTVPLAFAG GIFALLFYGL
SLNIYSQIAL IMLLGLATKN GILIVEFTNQ LRDKGLPVYH ALVSATHLRL RPIVMTAFTT
CAGTIPLIFS EGAGAETRQI LGYVLLWGVA FSTLLSLFVV PVAYALVAKN TGSPQAKTDA
LKRALSES
|
|---|
| |