Gene Tcr_1976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1976 
Symbol 
ID3761176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand+ 
Start bp2171481 
End bp2172167 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content43% 
IMG OID637786725 
Producthypothetical protein 
Protein accessionYP_392240 
Protein GI78486315 
COG category[R] General function prediction only 
COG ID[COG2738] Predicted Zn-dependent protease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones63 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGTTAC TCATCATAGG GTTTATCGTC TTATTTGCGA TAACCTCTTT ACCCAATTTA 
TGGACCAATC ATATTCTTAA AAAATACAGC CGTCCGCATC CGGATATTCC CGGAACCGGC 
GCTCAATTTG CAGAACATTT AATTAAAAAA TATGAATTAC CCATCACCTT GGAAGAAACG 
ACTTCCGGAG ACCATTATGA TCCCGTAGAA AAAGTGGTGC GTATTTCCTC AGAAAACTAT 
CATTCGAACT CGTTGACAGC CATTACCACT GTTGCGCATG AAATTGGGCA TGCCTTACAA 
GATAAAACGG GTTATGAACC GTTAACACAA CGAACGGTTT TGATTGAGCG CTCTCAGTGG 
ATGCAAAAAT TCAGTGGGAT AGCCCTAATG ATCACTCCTG TTTTGATCCC ATTGCTGCAT 
ACTCCCATGA TTGGGTTGGT AACATTTGGC GCAGGCTTTA TTGCCATGGG GGTTCCGGTC 
ATGATTCATT TATCGACCCT GCCAGTCGAA TTTGATGCCA GTTATAAACG CGCACTCCCA 
TTACTGAGAG AAGGACATTA TCTTTCCAAT AGCGATCTGA AAAAAGCGCA TAAAATTTTA 
CGTGCCTGCG CCATGACGTA TGTCGCGGCC TCACTGTCCA GCCTGTTTAA TTTATGGAAA 
TGGATTCGAG CCATTAAAGG CCGTTAA
 
Protein sequence
MGLLIIGFIV LFAITSLPNL WTNHILKKYS RPHPDIPGTG AQFAEHLIKK YELPITLEET 
TSGDHYDPVE KVVRISSENY HSNSLTAITT VAHEIGHALQ DKTGYEPLTQ RTVLIERSQW 
MQKFSGIALM ITPVLIPLLH TPMIGLVTFG AGFIAMGVPV MIHLSTLPVE FDASYKRALP 
LLREGHYLSN SDLKKAHKIL RACAMTYVAA SLSSLFNLWK WIRAIKGR