Gene Tcr_1946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1946 
Symbol 
ID3761140 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp2133732 
End bp2134247 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content42% 
IMG OID637786689 
Product3-hydroxydecanoyl-(acyl carrier protein) dehydratase 
Protein accessionYP_392210 
Protein GI78486285 
COG category[I] Lipid transport and metabolism 
COG ID[COG0764] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 
TIGRFAM ID[TIGR01749] beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.00000000126826 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACAGC AGTCTAGCTA TAACAAAGAA GAACTTTTAT CCTGTGGGCG TGGAGAATTA 
TTCGGCCCTG GTAATGCACA ACTCCCTTTA CCACCGATGT TAATGTTCGA TCGCATTACC 
CATATTTCTG AAGAAGGCGG GGCTTATGGA AAAGGTGAGA TTCGTGCTGA GCTAGACGTG 
AAGAAAGACT TGTGGTTTTT TGAATGCCAC TTTAATGATG ATCCTGTCAT GCCGGGTTGC 
TTAGGCTTAG ATGCGATGTG GCAGTTAATT GGTTTCTTCC TAGGATGGAC AGGTGGACCA 
GGCAGAGGCC GGGCACTCGG TGCAGGTGAA GTTAAGTTTT ATGGTCAAGT ATTGCCAACG 
GCTAAAAAAG TTGAATATGT TATTAATATG AAGCGAGTAA TCAAACGTAA GCTTTATATG 
GGGATTGGAG ATGCCCATCT ATATGTTGAC GGACGAGAAA TCTACTCGGC AGATGACTTA 
AAAGTTGGTT TGTTTACAAA TACGGATAAT TTTTAA
 
Protein sequence
MEQQSSYNKE ELLSCGRGEL FGPGNAQLPL PPMLMFDRIT HISEEGGAYG KGEIRAELDV 
KKDLWFFECH FNDDPVMPGC LGLDAMWQLI GFFLGWTGGP GRGRALGAGE VKFYGQVLPT 
AKKVEYVINM KRVIKRKLYM GIGDAHLYVD GREIYSADDL KVGLFTNTDN F