| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1909 |
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| Symbol | |
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| ID | 3761103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 2089977 |
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| End bp | 2091959 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637786652 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_392173 |
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| Protein GI | 78486248 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.30039 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCAAT CTCCTACTTC AGAACCCGCA AGACTGAACC CCCCTGTTTT TTTTACCGCC
TCAGGCCTGG TTATTTTACT GTTGTTGTAT GCCGCTATTT TTCCAAAGCA AGCGGACGGC
GCTTTCAGTC ACTTACAAAA CGTGATTGTT GATAATGGCA GTTGGTTTTA TGTTCTGACG
GTTGCCATCA TTTTAATCAC AGTGGTATTT CTTGGGCTCT CCCGCTATGG AGATATTAAG
CTGGGGCCAG ACCATGCTTC GCCTGATTAT TCCAAAATCA CGTGGTTCTC GATGCTATTT
TCCGCAGGTA TGGGGATCGG GTTAATGTTT TTTGGGGTCG CAGAACCGGT CATGCACTTT
CTGTCACCGC CTGTCGGAGA TGCTGGAACA GTTGAAGCTG CTCGTCAAGC CATGAAGATA
ACCTTTTTCC ATTGGGGGTT ACATGCTTGG GCGATCTATG CCATTGTGGC CTTAATTTTG
GCGTTCTTTA GTTATCGTCA TGGCTTGCCG TTAACGATGC GCTCGGCTTT ATATCCTTTG
ATTGGTGAAC GTATTTATGG GCCGATAGGG CATGCAGTGG ACGTCTTTGC GGTCATTGGA
ACGGTATTCG GGATTGCCAC CTCATTAGGG TATGGGGTAT TGCAAATGAA TACAGGATTA
AATTATTTAT TTGAAGTGCC TGTCGGTGTG ATTACCCAAG TGATCTTAAT TGCAGCCGTG
ACCGCTTTAG CGGGGGTTTC AGTGGTGACT GGATTGGACA AAGGGATTCG TCGTCTATCC
GAACTGAATA TGAGTCTGGC TGTTATTTTA ATGTTATTGG TATTGTTTTT AGGCTCAACG
ATTTTCTTGA TGCAAGCTTT AATTCAGAAT GCCGGATCTT ATTTGTCTGA CATCGTTCGC
GTGACGTTTA ATTTGTTCGC CTATGAAAAA ACCGATTGGA TTGGAGGCTG GACGATTTTT
TATTGGGCTT GGTGGCTAGC GTGGGCCCCT TTTGTAGGTC TCTTTATTGC CCGTGTTTCG
CGAGGACGCA GTATCCGTGA ATTTGTAACT GGGGTTCTGT TTGTGCCGGT TGGCTTCAGT
ATGATGTGGT TTACCTTCTT TGGGAATTCG GCCATCGATA TGATTTTGAA TGGCGGATTG
GACAGTTTGG GGAAAGCCGT ATCGAATGAT GTGGCCATCG CCTTGTTTGC TTTCTTGGAT
CAGTTTCCTT TTGGGGCAGT GTTATCGTTT ATTGCGATTT TAATGGTCAT TATTTTCTTC
GTTACATCCG CTGATTCCGG AGCGTTGGTG GTAAATATGT TGTGCTCCAA TGGTCGAGAT
GATACACCGA TCTGGCAAAG ACTGTACTGG GTCATAGGGG TTGGATTGAT TGCCGCTATT
CTCTTGCTTG CCGGAGGGTT GGGGGCTTTA CAGACATTGA CGATTGCCAG TGCCTTGCCA
TTTTCCATCG TTCTCTTGAT TGCCACTTAT GGTTTGATTA TGGCGTTAAG GGTTGATATT
GCCAAACGCG ACAGTTTGCA GATGAATGTG GCGCCAACAC CACCCGCTTC GGCAGATGGT
AACTGGAAAG AGCGGTTACA TAATATTGTC GATTATCCGA CCAAATCGGT GGTAAGCCGC
TATATTCAGA GTGTGGCAAG ACCTGCTTGT GAAGAAGTCG CTGAAGAGCT TAAAGCAGAG
GACTTGGATG CCTTGGTCGA AAATGAAAAG GACAATGACC GTGTCCGTTT GATCGTTCGT
CATGGTGAAG AAGCTGATTT CATTTATGAA ATTCGCAGTC GTTCACATTT GAAACCGGAA
TTTACTCAAG TTGAAACCGC AATCGATGAG ATGGATGAAT CGGCGCGTTA TTATCGTGCT
GAAATTCATT TACGCGAAGG TGGGCAGGAT TATGATGTCA TGGGGTGGTC AAAGCAGGCC
ATTATTCATG ATATTATTGA TCACTACCAT AAGCATATGC ATTTCTTGCA CGTGTTGCGT
TAA
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| Protein sequence | MNQSPTSEPA RLNPPVFFTA SGLVILLLLY AAIFPKQADG AFSHLQNVIV DNGSWFYVLT
VAIILITVVF LGLSRYGDIK LGPDHASPDY SKITWFSMLF SAGMGIGLMF FGVAEPVMHF
LSPPVGDAGT VEAARQAMKI TFFHWGLHAW AIYAIVALIL AFFSYRHGLP LTMRSALYPL
IGERIYGPIG HAVDVFAVIG TVFGIATSLG YGVLQMNTGL NYLFEVPVGV ITQVILIAAV
TALAGVSVVT GLDKGIRRLS ELNMSLAVIL MLLVLFLGST IFLMQALIQN AGSYLSDIVR
VTFNLFAYEK TDWIGGWTIF YWAWWLAWAP FVGLFIARVS RGRSIREFVT GVLFVPVGFS
MMWFTFFGNS AIDMILNGGL DSLGKAVSND VAIALFAFLD QFPFGAVLSF IAILMVIIFF
VTSADSGALV VNMLCSNGRD DTPIWQRLYW VIGVGLIAAI LLLAGGLGAL QTLTIASALP
FSIVLLIATY GLIMALRVDI AKRDSLQMNV APTPPASADG NWKERLHNIV DYPTKSVVSR
YIQSVARPAC EEVAEELKAE DLDALVENEK DNDRVRLIVR HGEEADFIYE IRSRSHLKPE
FTQVETAIDE MDESARYYRA EIHLREGGQD YDVMGWSKQA IIHDIIDHYH KHMHFLHVLR
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