Gene Tcr_1880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1880 
Symbol 
ID3762416 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp2056292 
End bp2057395 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content44% 
IMG OID637786623 
ProductBeta-lactamase-like 
Protein accessionYP_392144 
Protein GI78486219 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.0000000000360179 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAGGCG TTTATAAACT AAGTTTGATT GCTGTTATGG CCGGAATAGG TGTATTGCCT 
AATGCCAACG CAGAAACCTA TCAAGATCCC TATGTCGCTG GTTTTGAAGC CTGGGCCAAA 
GAAGTCGGTA ATGGCAATGG TAATATCCAG TCTCAGGCAG CCAAAGCGTA TGCCAATGAT 
GTGAAAGCCA CTCAAAAAAA GGCCGGTTAC ATCGGAGACA AATTGCCGTT GCCACAAGCT 
GTGAAAGTGA CAGAGGGCGT TTACACCATT GTCGGTAGCC AGATTTGGCA TAACCCTTCC 
AACTTCGGAC TCAACAACAA CATTTCGTTT GTTATTTTCA AAGATGGCGT GTTTGTCTTT 
AATGCCGGCG CTAACCCTGC CATTGCCTAC AGTGTGCACC AGCAAATCAA AAAAATTACT 
GATAAGCCGG TTAAATGGCT GGTGGTTGAA AACAACCAGG GGCACGCTTA TTTAGGGGCA 
AGCTACTGGG TTGATGTGGG TGTTAAGAAC CTGTATTCCA GTGAATTGGC TAACATGCAG 
TTTGATCAGG CGTTCAATGC CATCAAGCAG GAGTGGTCAA TGCGAGTCGG CAAGGCCATT 
ACCGCACCAG CGCGTAATGT CTCAGATAAA TTTACGACCT TTAACAATAA AAAGGAAGTG 
GATGTTGGCG GTGGTGAAAA ATTCATTTTG ATGGATTTTG GTCCCGGGCA TACCCCGGCA 
TCCACCAGTG TTTACATTCC ATCCAGAAAA GTCTTTTTCT CAGGTGATTT AGCCTTTAAT 
GAACGCATGC CAGTGATGTT TGCTTACACC AACAGTTTTG ATTGGATGAA CTCGTTTGAA 
AACATGATGA AAGTCATTCC AAAAGATGTG TTTGTGATTC CGGGGCATGG TACGCCAACC 
AATATGGCGA CGGTGAAAAA ACAAACCTAT GACTATTTCC GTTATGTGCA GAAACAAGTG 
CAAAAAGTGG TCGATGAAGG TGGCCATCAG GAAGAAGCGG AAAATATCGA TCAATCGATG 
TATAAAGATC GTCCGGTGTT TGACCAAGCC GCAAAAAATA ATGCTAGACG AATCTATATT 
GAAATTACTG GCGGGGATTT TTAA
 
Protein sequence
MRGVYKLSLI AVMAGIGVLP NANAETYQDP YVAGFEAWAK EVGNGNGNIQ SQAAKAYAND 
VKATQKKAGY IGDKLPLPQA VKVTEGVYTI VGSQIWHNPS NFGLNNNISF VIFKDGVFVF 
NAGANPAIAY SVHQQIKKIT DKPVKWLVVE NNQGHAYLGA SYWVDVGVKN LYSSELANMQ 
FDQAFNAIKQ EWSMRVGKAI TAPARNVSDK FTTFNNKKEV DVGGGEKFIL MDFGPGHTPA 
STSVYIPSRK VFFSGDLAFN ERMPVMFAYT NSFDWMNSFE NMMKVIPKDV FVIPGHGTPT 
NMATVKKQTY DYFRYVQKQV QKVVDEGGHQ EEAENIDQSM YKDRPVFDQA AKNNARRIYI 
EITGGDF