| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1826 |
|---|
| Symbol | |
|---|
| ID | 3761039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 2002634 |
|---|
| End bp | 2003689 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637786570 |
|---|
| Product | ApbE-like lipoprotein |
|---|
| Protein accession | YP_392092 |
|---|
| Protein GI | 78486167 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCCT TCTCTTTTCG ACCGCTTCCG ATTTTTAAAG GGCTTGGCCT ATTTCTGCTT
CTGTCTGTTT TGAGTGGCTG CTCTCAACCA TCCTATGAAA AAGTACAGCA AACTTTTTAC
GTGTTTGGCA CCGAAGTGCA GGTGGAAATC GTCGACACCC CCAAAGAAAA AGCACAACAC
GCCATTCAAA CCATTGAAGC ACGCTTCCAG AAATTCAACC GCGACTGGCA TGCCTGGGAA
CCCGGCGGCA TCATTGCCAA AATCAACACC GCCATTTCGC AACAACAGCC CATTGAAGTG
CAAGAAAGCA TCAAAGCCTT TATTTTAAAA TCCAAAAAAC TGGCTGCCGA ATCCGATTAT
TTATTCGATC CCGGCATTGG TCAATTGATT AATCTATGGG GATTTCATTC AGAAGACTGG
CATGGTCCGC CGCCTTCAAA AGACGTGATT CAGCAATGGC TGGCAACTCG ACCATCAATA
AAAGACATTC ACTTTAACGG CCCGCGTTTA TTCAGCGACA ACCCAAACGT TCAACTCGAC
TTTGGCGGAA ATGCAAAAGG GCTGGCACTG GACATTGCCA TTCAAAGCTT GAAATCGGTT
GGCATTCAAA ATGCGATTGT CAATATTGGT GGGGACATGC GCATTATCGG CTCCAAAAAC
CCGAATCAGC ATCAGGCTTG GCGCATCGGC ATTCAAAACC CACAACACCC TGGAAAAATT
TTAGCGGCAA TCCAAATCCA GGGCGATGAA AGCATTGTCA CGTCAGGATC TTACCAGCGT
TACTTTGAGT GGAAAGGAAA GCGTTACAGC CACATCATCA ACCCGAACAC CGGTTACCCA
GCCGATCACT TTATATCCGT CACAGTGATT CACAAAGATG CCACCACCGC CGATGCTGCG
GCCACCGCTT TAATGATTGC CGGCCCAAAA CATTGGCAAA AAATTGCACA ACAAATGCAC
ATCACAGAAG CTTTCATGAT TGATGACAAT CAAAAAACCT ATGTCACACC CGATATGGCA
AAGCGTTTGA CGCTACTGCA TGAAGTCCAA AATTAA
|
|---|
| Protein sequence | MTSFSFRPLP IFKGLGLFLL LSVLSGCSQP SYEKVQQTFY VFGTEVQVEI VDTPKEKAQH
AIQTIEARFQ KFNRDWHAWE PGGIIAKINT AISQQQPIEV QESIKAFILK SKKLAAESDY
LFDPGIGQLI NLWGFHSEDW HGPPPSKDVI QQWLATRPSI KDIHFNGPRL FSDNPNVQLD
FGGNAKGLAL DIAIQSLKSV GIQNAIVNIG GDMRIIGSKN PNQHQAWRIG IQNPQHPGKI
LAAIQIQGDE SIVTSGSYQR YFEWKGKRYS HIINPNTGYP ADHFISVTVI HKDATTADAA
ATALMIAGPK HWQKIAQQMH ITEAFMIDDN QKTYVTPDMA KRLTLLHEVQ N
|
|---|
| |