| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1793 |
|---|
| Symbol | |
|---|
| ID | 3761834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 1965565 |
|---|
| End bp | 1967361 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637786536 |
|---|
| Product | amidase |
|---|
| Protein accession | YP_392059 |
|---|
| Protein GI | 78486134 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | [TIGR02713] allophanate hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTGCC GTATTACTCA ATTACAATCA GTCTATGATT CCGGATCCTT AACGCCACGC
CAATTGATGA CGACATTAAG ACAACAGGCG TCGGAGTATG ACGCTTACAA CCTTTTCACC
CATCTATTGA CGGAACAGGA AATCGACTCT TTTGTGAGCA AGCTTGAATC TACTAAGCCA
AACAGTCTGC CACTTTGGGG CATTCCATTT GTCATAAAAG ACAATATCGA TCTGGAGGGC
ATTCCCACCA CCGCGGCATG CCAAGAGTTT GCTTATACGC CTGAGAAATC GGCCACGGTG
GTTCAACTTT TGATTGAAGC GGGCGCGATT CCACTCGCCA AAACCAACAT GGATCAATTT
GCAACGGGCT TGGTTGGCAC CCGTTCGCCT TATGGCGTTT GTCATAATGC GTTTGACTTT
GACATGATTT CAGGCGGTTC TAGCTCGGGG TCGGCTGTGG CGCTCTCTTT AGGATTGTGC
AGTTTTTCAC TGGGCACCGA CACCGCTGGG TCCGGTCGTG TTCCAGCCGC CTTTAATAAT
TTGGTTGGGT TAAAACCCTC AAAAGGCCTC CTAAGTACGT CAGGCGTAGT GCCTGCCGTA
CGCTCGCAAG ACGTCGTGAG CATTTTTGCT TTAAACGCCC AAGACGCTTA CGCCGTTTTT
GACACCGCAG CTCAACCGGA TTCAACCGAT GATTTCAGCC GACAGGAAAT CGCTTTAACG
CCGCCTGCTT GGCCAACAAA ACCGGTGATC GGAATTCCAG ATGCTAATAG TTTACGTTTT
AATGATGATT CTGAAGCAGA AGCCAATTTT AGGGAAACCA CCAAAAAACT CAAAACACTT
GGGTTTGAAA TCAAAGAAAT CGATTTTCAA CCTTGGTTGG AAACCGCCAA ATTACTCTAC
GATGGTGCCT GGGTGGCAGA ACGCTACGCC GCTATTGAGT CTTTCTTTGA TGCGAACGAA
TCCGCTTTGG ACCCAACGGT AGGCAAAATC ATTGCCGGTG CAAGAAACCT TTCTGCAACG
GATGCCTACA AAGGCAGCTA TGCCTTACAA AAAGCTCAGA ATGAAACCCA AACCATATGG
GAAACCGTGG ACTGTTTGCT CACCCCCACC ACCCCCACTG TTTTCAGTAT TGAAGAAGTC
GAATCCGATC CAGTCGGGTT AAATTCCTTA TTGGGCACCT ACACCAATTT TATGAATTTG
CTGGATTATG CCGCCGTGGC AATGCCAACT GGGTTCCGAG CCGATCAGAT GCCGACCGGT
GTCACCTTGT TTGCACCCGC CGGAAGTGAC CGCAAATTGT TACAGTTAAC CGATGAACTC
CATGGCAATT TTATGGACAT CGCCGGAGCT CATAAAACGC CGCTTCCCGT TCCAAGCCCA
AGCCTTTTTC AAGTAACGGA CACGATTCCA TTAGCGGTGG TCGGCGCTCA CCTCACCGGA
TTTCCATTAA ACACGCAATT AATTGAACGC GGCGCTCGGT TATTGAAAAC CACTCAGACC
GCGCCTAAAT ATCGCTTTTT TGAGCTGGCG GGCGGCCCTA TTTTAAAACC TGGTTTAATC
AAAGATGATT CCAACGGCGG CTCAATTGAA GTCGAAGTTT GGGCGATGCC CAAACAACAT
TTAGGATCGT TTCTCGCTTT AATCCCTTCT CCACTAGGGT TAGGAAAAGT GGAACTGGTT
GAGGGCGATC AAGTCGTTGG GTTCATTTGC GAACCCTATG GCATTGAAGG TGCCACTGAA
ATCACCGATA CAGGAGGTTG GCGAAACTGG ATGCAACAGA AAACCCACGC TCAATAA
|
|---|
| Protein sequence | MDCRITQLQS VYDSGSLTPR QLMTTLRQQA SEYDAYNLFT HLLTEQEIDS FVSKLESTKP
NSLPLWGIPF VIKDNIDLEG IPTTAACQEF AYTPEKSATV VQLLIEAGAI PLAKTNMDQF
ATGLVGTRSP YGVCHNAFDF DMISGGSSSG SAVALSLGLC SFSLGTDTAG SGRVPAAFNN
LVGLKPSKGL LSTSGVVPAV RSQDVVSIFA LNAQDAYAVF DTAAQPDSTD DFSRQEIALT
PPAWPTKPVI GIPDANSLRF NDDSEAEANF RETTKKLKTL GFEIKEIDFQ PWLETAKLLY
DGAWVAERYA AIESFFDANE SALDPTVGKI IAGARNLSAT DAYKGSYALQ KAQNETQTIW
ETVDCLLTPT TPTVFSIEEV ESDPVGLNSL LGTYTNFMNL LDYAAVAMPT GFRADQMPTG
VTLFAPAGSD RKLLQLTDEL HGNFMDIAGA HKTPLPVPSP SLFQVTDTIP LAVVGAHLTG
FPLNTQLIER GARLLKTTQT APKYRFFELA GGPILKPGLI KDDSNGGSIE VEVWAMPKQH
LGSFLALIPS PLGLGKVELV EGDQVVGFIC EPYGIEGATE ITDTGGWRNW MQQKTHAQ
|
|---|
| |