| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1779 |
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| Symbol | |
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| ID | 3761417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1943293 |
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| End bp | 1944576 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637786517 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_392045 |
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| Protein GI | 78486120 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.0975048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGACTC GATTATTTTG GTTGTTTCTA TCAGTTATTT TTACTTCTAT GCCCGGACTT
CAAGTCTATG CGGCTCAAAA AGATTCCAAC AGTTCTCCGC CATCCTTTGG GGAAAATGAA
GGGGTTTATA AATACGTTTG TCCTATGCAC CCTCAAATTG TGCGGGATCA CCCTGGCACA
TGTCCGATTT GCGGCATGGA CTTGGTTAAA CAGCGCTTCT CTCAAATGGA TAGTGCGCCT
GAAATCCAAA TAAATTCAAG TGCTTCAGCT GCAGACGGTT CTGCTGTCGG ATTACAACAA
CAATTTTCCA TTCGAACGGC TAAGGCGGAA AAACACACGC TGTGGAAATA CATGCCTACT
TTTGGAAAAG TGGTAGCCGA CGAAACTAAA GTGGTGCATG TTCATCCACG AGCTTCCGGT
TGGATCAGCG ACTTAGCGGT TCGTAATAAT GGGGATGCCA TTGAAAAAGG GCAGTTACTG
TACCGAATTT ATTCCCCAGA AATTGTGGCG GCACAGCAAG ATTATTTGCA GGTAATACAC
AATCAGCGTC GTTTAGGCCA ACAAGCCAAT TCGCTGGTCG ATTCAGCGAA GGTGCGTTTA
CAACTATTAG GGCTGGACGC TCGCACGATT AAAGCACTCG CTAAAAAAGG CACGCCAATC
CATAAAGTTC CGGTTTATGC GCCTCAAACG GGGTTTGTGA ATGACTTAAG TGTGCAAACC
GGAATGTATG TCCAACCGCA AACGGAATTA ATGAGTTTAA TGGATTTATC AACTGTTTGG
GTTGAAGCCG AAGTCTTGCC ACTTCAGCAA GATTGGTTAA AAGAAGGGTT GACGGTGGAC
ATTAAAACGC CGGCTTACCC TGGAAAACAT TGGGAAAGCC AAATTGATTA TTTATACCCA
ACGGCCGATC CTGTGACCCA AGCATTCAAG GTGCGAATTC CTTTGAATAA TACTCAGCAG
AAATTCAAAC CTAACATGTT GGTGGAAACC ATTATTTATG GTGGACCGAA ACGTGATGTC
TTGGCGATTC CGTTAGAAGC GGTGATTGAT GATGGTGAAA GCAAACGCGT GGTTGTTAAA
ACCGAAAGTG GAAGCTTCAA GGTGAAAAAA GTCGTCACTG GGATGCAGAC TCAAGGCATC
GTTGAAGTGA TTTCAGGGAT TCAACCGAAT GAAGAAGTCG TCATTTCCGG ACAATTCTTG
ATCGACTCTG AAAGTCAGGT GCAATCAAAT TTGCGTCGTT TAAGCGGACA GAAACCTTCT
CGTAACGCGC ACGCAAACCA TTAG
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| Protein sequence | MMTRLFWLFL SVIFTSMPGL QVYAAQKDSN SSPPSFGENE GVYKYVCPMH PQIVRDHPGT
CPICGMDLVK QRFSQMDSAP EIQINSSASA ADGSAVGLQQ QFSIRTAKAE KHTLWKYMPT
FGKVVADETK VVHVHPRASG WISDLAVRNN GDAIEKGQLL YRIYSPEIVA AQQDYLQVIH
NQRRLGQQAN SLVDSAKVRL QLLGLDARTI KALAKKGTPI HKVPVYAPQT GFVNDLSVQT
GMYVQPQTEL MSLMDLSTVW VEAEVLPLQQ DWLKEGLTVD IKTPAYPGKH WESQIDYLYP
TADPVTQAFK VRIPLNNTQQ KFKPNMLVET IIYGGPKRDV LAIPLEAVID DGESKRVVVK
TESGSFKVKK VVTGMQTQGI VEVISGIQPN EEVVISGQFL IDSESQVQSN LRRLSGQKPS
RNAHANH
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