| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1778 |
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| Symbol | |
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| ID | 3761416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1940120 |
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| End bp | 1943284 |
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| Gene Length | 3165 bp |
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| Protein Length | 1054 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637786516 |
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| Product | heavy metal efflux pump CzcA |
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| Protein accession | YP_392044 |
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| Protein GI | 78486119 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCGTT CAATTATTGC AGCTTCCATT GAAAACCGAT TGTTGGTTCT TCTTATCAGT
GTCATGATGG CTTTTTGGGG TTGGAAAGCA GTTCAAGAAA CACCGCTGGA TGCGATTCCT
GATTTGTCAG ATGTTCAAGT CATTGTAAAA ACACCTTTCC CGGGACAAAG CCCACAGTTG
GTAGAAGATC AGGTGACGTA TCCTGTTTCT AATCTGATGA TGTCGGTTCC AAAGGCGAAA
ACCGTTCGGG GCTATTCTTT CTTCGGCGAC TCTTATGTGT ATGTGTTGTT TGAAGAGGGA
ACCGATCCCT ATTGGGCCCG TTCTAGGGTT TTAGAGTACC TCAACCAAGT CAAAGCGCAA
TTGCCTAGTG GAGTTCAGCC AAGTCTTGGA CCAGATGCGT CCGGCGTTGG TTGGGTTTAT
CAATACGCGT TGGTCGACAA GAGCCATAAA CTGGATTTGT CTGAGCTTCG TACGCTACAA
GACTGGTTCT TAAAGTTTGA ATTGCAAGCA ATCCCTGGAG TGTCGGAAGT GGCCGCAGTC
GGTGGCATGG TCAAGCAATA TCAAGTGGAA GTGGATCCGA ATAAGTTACG GGCGTATCAC
TTGCCGTTGA AAAAAGTACA AACCGCAATT CAACAAAGTG CAGTTGAAAT GGGGGCTTCT
GTCATAGAAC TGGCTGAAGC CGAATATATG GTCGGTGTGA AAGGTTATAT CACCACTTTG
GAAGACTTGC AAAACGTGCC GGTCGGAAAA AATTCAGTGA CCAACACGCC TTTGTTACTT
AAAGATATCG CACGGGTTAA GCTGGGTGCC AAACCACGAC GTGGTATTGC GGATCTGAAT
GGTAAAGGTG AAGTTGTTGG CGGTATTGTG GTGATGCGTT CAGGTGAAAA TGCCCAGAAA
GTCATTGAAG CCGTGAAACA AAAAATCGCT CAAATTCAAC CAGGCCTGCC TGATGGGGTA
GAGCTGGTTG AAGTGTATAA CCGTTCCGGC TTAATTCAAC GTTCAGTGTC GACCTTGAGC
CATAAACTCA TTGAAGAAAT GATTGTTGTG GCTCTAGTGT CGTTACTGTT TTTGCTGCAT
TTACGCTCCG CATTGGTTGC GATTATTTCG TTGCCGTTAG GTGTTTTAGG TGCCTTTATC
GTTATGCAGT CTATGGGTGT GACAGCGAAT ATCATGAGTT TAGGGGGGAT TGCCATTGCC
ATCGGTACCA TGGTGGATGC GGCCATCGTG ATGATTGAAA ACGCTCATAA ACATTTAGAG
GCGTATCGAC ACCGAACAGG TGAAATCGCC ACAGGCAAAA CGCATTGGGA ATTGATTTTA
AAATCCTCCC AGGAAGTTGG CTTGCCTTTG TTTTTATCGT TATTGATTAT TGCATTGAGC
TTTTTGCCGA TTTTCGCTTT ACAAGAACAG GCGGGTCGTC TCTTTACGCC CTTAGCGTTA
ACAAAAACAC TTGCGATGGC GGTGGCGGCC GGCCTGGCGA TTAGTTTGGT TCCGGTGTTA
ATGGGGTATT TCATTCGAGG GAAATTGCCT GATGAATCGA AAAACCCGCT AAATCGTGGT
TTGATAAAGG TGTATAAACC GTTGTTAAAA GGGTTATTGA AGTTTCCTAA AACAACGATT
TCCGTCGCTG CGTTGGCGTT AGTAACCATT TTCTATCCTT GGCAACAAAT TGGTTCAGAA
TTTATGCCGG AGTTGGAAGA AGGGGATTTG CTGTATATGC CCACCACGTT ACCCGGGATT
TCCATTGGTG CCGCGCAAGG ATTGTTGCAG GAAACCGATC GCATTATCAA AGGGTTTCCT
GAAGTGAAAA GTGTTTTTGG TAAAATTGGT CGCGCGGATA CCGCAACCGA CCCGGCGCCA
TTAACGATGA TCGAAACGAC GATTCAGTTA AAAGACAAGT CGGAATGGCG AGAAGGCATG
ACACTGAAAA AATTGATTGA CGAGTTGAAC CATGCAGTGT CTATTCCCGG TTTAACCAAT
GCCTGGGTTC AACCGATTAA AACGCGGATT GATATGCTTT CCACTGGGAT TAAAACCCCG
ATCGGAATCA AGGTCTCCGG GGATGATTTA GCTGAAATTC AACAAGTCGG TAAACAGATT
GAAGCGACGG TATCGAAAGT GCCGGGCACA CTTTCGGCGT TTTCCGACCG TTCAGAAGGC
GGGCGTTACA TTGATGTTCT GCCAAAACGA ACCGAAGCGG CACGATACGA TTTGAGTATG
GCGCAGTTGG CGAATATCGT GCAATCGTCT GTGGGGGGCA AGGTATTGCA AGAAACCATT
GAAGGACGTG AGCGCTATAG CATCAATTTA CGTTACCCAC AATCGTGGCG AAATTCGGTG
GAAGCGCTTC GGCAATTACC AATTGTGACC GCCTCCGGTG CTCAGATTCA ACTAGGCATG
GTCGCAGACA TTAAAGTACG TTTAGGCCCA CCGGTTATTA AGTCCGAAAA TGCCCGCTTG
AATGGATGGA CCTTTGTTGA TTTAAAAGCG GGAACGGACT TGGCTGGCTA TGTCCAAAAA
GCGCAAGCAA CCGTCGCAGA CGAAGTGGAC TTACCTCCAG GATACAGTGT TCAGTGGTCG
GGGCAGTATG AATACCTTCT GAAAGCCCAG AAAAAGCTCG CTGAAATCGT GCCGTTTACA
CTGTTGATTA TTTTTATTCT GCTGTATTTT ATTTTCAAAA ATATCACAGA GGCCCTTATG
ATTTTAGGGG TGATTCCGTT TGCATTGCTC GGATCGGTTT GGTTTATCTG GGCGTTAGGC
TTTGATTATT CTATTGCCGT TGCAGTGGGG ATGATTGCGT TGGCCGGTGT TGCCACCGAA
TTTGGTGTGG TGATGCTGAT TTACCTGAAA AACGCTATTG AAACCGCTAA AGAGAATAAC
CAACTGAATA ATGCCGCTGA TCTTCGTGCC GCCATTATGG AAGGGGCCGT CAATCGGGTG
CGACCTAAAG CGATGACTGT CAGTGTCATT GTGGTCGGTT TATTACCGAT TATGTTTTCA
GATGGCACCG GTGCCGAGGT GATGCAACGC ATTGCAGCAC CTATGGTAGG GGGTATGATT
TCAGCACCAG TCGTATCGAT GGTCTTGATT CCATTATTAA CGTATTTGCT GTATTTGAAA
AAAGGTTTTT CAGAATCAGC GGACTCTGAA AAAGGAGGGG CTTAA
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| Protein sequence | MIRSIIAASI ENRLLVLLIS VMMAFWGWKA VQETPLDAIP DLSDVQVIVK TPFPGQSPQL
VEDQVTYPVS NLMMSVPKAK TVRGYSFFGD SYVYVLFEEG TDPYWARSRV LEYLNQVKAQ
LPSGVQPSLG PDASGVGWVY QYALVDKSHK LDLSELRTLQ DWFLKFELQA IPGVSEVAAV
GGMVKQYQVE VDPNKLRAYH LPLKKVQTAI QQSAVEMGAS VIELAEAEYM VGVKGYITTL
EDLQNVPVGK NSVTNTPLLL KDIARVKLGA KPRRGIADLN GKGEVVGGIV VMRSGENAQK
VIEAVKQKIA QIQPGLPDGV ELVEVYNRSG LIQRSVSTLS HKLIEEMIVV ALVSLLFLLH
LRSALVAIIS LPLGVLGAFI VMQSMGVTAN IMSLGGIAIA IGTMVDAAIV MIENAHKHLE
AYRHRTGEIA TGKTHWELIL KSSQEVGLPL FLSLLIIALS FLPIFALQEQ AGRLFTPLAL
TKTLAMAVAA GLAISLVPVL MGYFIRGKLP DESKNPLNRG LIKVYKPLLK GLLKFPKTTI
SVAALALVTI FYPWQQIGSE FMPELEEGDL LYMPTTLPGI SIGAAQGLLQ ETDRIIKGFP
EVKSVFGKIG RADTATDPAP LTMIETTIQL KDKSEWREGM TLKKLIDELN HAVSIPGLTN
AWVQPIKTRI DMLSTGIKTP IGIKVSGDDL AEIQQVGKQI EATVSKVPGT LSAFSDRSEG
GRYIDVLPKR TEAARYDLSM AQLANIVQSS VGGKVLQETI EGRERYSINL RYPQSWRNSV
EALRQLPIVT ASGAQIQLGM VADIKVRLGP PVIKSENARL NGWTFVDLKA GTDLAGYVQK
AQATVADEVD LPPGYSVQWS GQYEYLLKAQ KKLAEIVPFT LLIIFILLYF IFKNITEALM
ILGVIPFALL GSVWFIWALG FDYSIAVAVG MIALAGVATE FGVVMLIYLK NAIETAKENN
QLNNAADLRA AIMEGAVNRV RPKAMTVSVI VVGLLPIMFS DGTGAEVMQR IAAPMVGGMI
SAPVVSMVLI PLLTYLLYLK KGFSESADSE KGGA
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