Gene Tcr_1760 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1760 
Symbol 
ID3761527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand+ 
Start bp1921022 
End bp1921684 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content43% 
IMG OID637786498 
Producthypothetical protein 
Protein accessionYP_392026 
Protein GI78486101 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAAC ATCCGAACGG TTCTATTACT TACAGTGTGC GAGATGCTTA CGGTTTAATC 
CAAGTGGTCG ATAATGAAAT TACTCGAAGT CTTTATTTTG ATTCGCTCGT TGAACAAAGT 
CGTTACTATT TTCACGCCCC TTTGACATTG GCATTTGAGT ATCAATCCGC GCTGTTAGAA 
GAGGCGCTGG AGCAGGCCCA TTCAAAACGT GTCCAATCGA TCTTAATGTT GGGGTTAGGC 
GGCGGTAGTC TCACCACCCA GCTACACAGT GTTTTACCAA ACTGTCAACA AACCCTCGTT 
GAACTGCGCG AAGCGGTCAT TCAGATTGCC TATCGTTATT TTTATTTACC CGAGTCACCG 
AAAATCAATC CCATACAGTG TGATGCTGCT GATTTTGTTC AACAAGCAAC ACAACAATAC 
GATCTGATTA TTGTCGACTT GTATGACAAT GACAGTATGC CCAAAGCCTT TAGTAAAGAA 
GCGTTTTTAT CACAACTGCG CTGCTTGGCT TCTGGCTCGG GTCGCATTTT ATTTAACTTA 
TGGAAAAGCT CCCCCGAAAC AACCTTAAAA ATCATTCAGT TTTGGGAACA ACAGCCGCAT 
GCCCACCTAA AAACAAGAGA AATCAAGTCC AGTGGCAATG TCATTCTTTG TGTGGACCTT 
TAA
 
Protein sequence
MAKHPNGSIT YSVRDAYGLI QVVDNEITRS LYFDSLVEQS RYYFHAPLTL AFEYQSALLE 
EALEQAHSKR VQSILMLGLG GGSLTTQLHS VLPNCQQTLV ELREAVIQIA YRYFYLPESP 
KINPIQCDAA DFVQQATQQY DLIIVDLYDN DSMPKAFSKE AFLSQLRCLA SGSGRILFNL 
WKSSPETTLK IIQFWEQQPH AHLKTREIKS SGNVILCVDL