Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_1725 |
Symbol | |
ID | 3761024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | - |
Start bp | 1885500 |
End bp | 1886897 |
Gene Length | 1398 bp |
Protein Length | 465 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637786463 |
Product | type II secretion system protein E |
Protein accession | YP_391991 |
Protein GI | 78486066 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGAATTC GAGAAAGACT CAGAAAAGTT GAGCAACAAA GACATGTGGC TGAAAAGATT GAGAAAAAAC AACAATCTTC CGATAGTCCG GTAGCCGAAG TCGATGCCAA ACCAGCCCAG AATACGTCTT TTTTAGAGAT TAAGAACCGT TGCCAGAAAA AAGCCGCTGA AGACGATGCG TTTTATGAAG CCGACAGTCA GGAAACGCGT AAGGAGCTAC GACCCAGACT GGAAGAGCTG GTGCGCGAAG TGGCAAGCGA TATTGGGTAT CCATTAACGG ATATTGAAGT CCGACAACTC AGTTTAGAAT TGTTGGATGA GATTTATGGA CTCGGACCGA TAGAGCCATT GATGGCCGAT CCAAGTGTTT CCGATATTTT GATTAACGGT CATCAGCAAA TCTACGTTGA GCGTCGCGGC AAACTTGAAT TGACCGATGT TTCTTTTATC AGTGAAGAGC ATTTACGTAA CAAAGTGGAT CGAATGCTAT ACAGCACTGG GCGTCGTGTC GATGAATCGT CGCCATTAGT GGATGCTCGA TTACCCGACG GTTCACGAAT TAACATTATT ATTCCCCCTT TAGCCGTGGA CGGTATCAGT GTCTCCATTC GACGCTTTCC TGAACAGCAT CTGCGTCCGA AAGATATGAT TGCCTATGGT TCAATGACTG AACAAATGTA TGAGTTTTTG AACTATGGGG TGAAGTCCGG ATTGAATATT TTAGTGTGCG GGGGAACTGG TTCCGGTAAA ACCACCACGT TGAATATGTT GTCCGGCCTG ATCCCAGAAG ATGAACGAGT GGTTACAATC GAAGACAGTG CGGAGTTAAG AATGCAGCAG TCGCATGTGG TTCGATTAGA AACTCGGCCC GCCAATGCGG AAGGTCAAGG CGAGTTAACA CAGCGCGAGC TGTTAAAAAA TGCTCTCAGA ATGCGCCCAG ACAGAATTAT TTTGGGAGAG GTTCGTGGTG GTGAAGTATT AGATATGCTT CAAGCGATGA ATACCGGGCA TGATGGTTCT TTAGCGACGT TACATGCTAA CAGTCCAAGA GACTGTATTT CGCGTTTAGA ATTGATGATT AATTTATCGG GTGTTGATAT TCCAGCGGCG TCAATTCGTA AACAAATTGC CAGTGCAATT GACATTATTA TTTACGTAAA CAGAGGCCGC GAAGGGAAAA GGCGTGTTGA GTCCATTACC GAAGTGGTTG GTATCGAAGA AGAAAATGTG GTGTTGCAGG AAATTTATCG GTTCGATAAC AAAATGGATG TGGCCACTGG GCGTCAATAT GGCGTTTTCA AATCGTCTGG GTTAAGACCC AGTTGTGGTA AAAAATGTGA GTCCGCCGGT ATGGTGTTAC CTGAAGACCT GTTTAACTTT GAAAAAGAGG TTTCTTAG
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Protein sequence | MGIRERLRKV EQQRHVAEKI EKKQQSSDSP VAEVDAKPAQ NTSFLEIKNR CQKKAAEDDA FYEADSQETR KELRPRLEEL VREVASDIGY PLTDIEVRQL SLELLDEIYG LGPIEPLMAD PSVSDILING HQQIYVERRG KLELTDVSFI SEEHLRNKVD RMLYSTGRRV DESSPLVDAR LPDGSRINII IPPLAVDGIS VSIRRFPEQH LRPKDMIAYG SMTEQMYEFL NYGVKSGLNI LVCGGTGSGK TTTLNMLSGL IPEDERVVTI EDSAELRMQQ SHVVRLETRP ANAEGQGELT QRELLKNALR MRPDRIILGE VRGGEVLDML QAMNTGHDGS LATLHANSPR DCISRLELMI NLSGVDIPAA SIRKQIASAI DIIIYVNRGR EGKRRVESIT EVVGIEEENV VLQEIYRFDN KMDVATGRQY GVFKSSGLRP SCGKKCESAG MVLPEDLFNF EKEVS
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