Gene Tcr_1679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1679 
Symbol 
ID3760957 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp1833076 
End bp1833951 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content36% 
IMG OID637786416 
ProductNAD-dependent epimerase/dehydratase 
Protein accessionYP_391945 
Protein GI78486020 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCGG ATTCTCATTC TAATAAAGTT CTTATAACAG GATTAGATGG TTTTACTGGC 
CAATACCTTA AATCTGACCT TGAGCTAAAT GGGTTTCAGG TCGTTGGGCT AACTGCCAAT
TTAATTGATC GTGAAGCGGT AATAAGTGAG GTTCTAACAT TAGAGCCAGA TTACGTTGTG
CATCTTGCAG GAATCTCCTT TGCGGCTTCT GAAGATACCG CTTCTATTTA CTCAGTTAAT
GTATCAGGCA CTGTGAATCT ATTAGACGGG TTATCTCAGC TAAACCATTC ACCTAAAAAA
ACGATTTTAG CCAGTAGTGC GACCGTGTAT GGCAATGTAA CTGGTTCGGT ATTGTCTGAA
TCTATCTGTC CAAAACCGAT TAGTCATTAT GGGTGCAGTA AATTGGCCAT GGAGCATATG
GCTCAAAACT ATACTGATAA ATTTCCATTA ATCATCACCC GGCCATTTAA TTACACCGGC
ATTGGTCATG CAGAGCACTT TCTTATTCCT AAAATAGTTA AAGCCTATCA AGATAAAAAA
ACAGTTATTG AGTTAGGTAA TTTAGATGTT TCCCGCGAAT TTAATGATGT GCGTGATATA
TGTAAGATTT ATCTCGATTT GTTGTTGAGT GAGAAAGATG GCATAACTGT AAATGTATGC
TCTGGGAAAA CTGTTAGTTT AATGAGTATT GTTTCGTTAA TGGATCAGAT AGCAGGTTAT
AAAATGAATG TAAAAGTAAA TCCTGCATTT GTTCGTGAAA ATGAAATTAA AGATTTGTCC
GGTGATGTTT CATACTTGAA TGATTTGGTT AAACCAGAGT TTAAATACGG TATTGAAGAT
ACTTTACGCT GGATGTATGG AGAAATATAT GATTAA
 
Protein sequence
MKPDSHSNKV LITGLDGFTG QYLKSDLELN GFQVVGLTAN LIDREAVISE VLTLEPDYVV 
HLAGISFAAS EDTASIYSVN VSGTVNLLDG LSQLNHSPKK TILASSATVY GNVTGSVLSE
SICPKPISHY GCSKLAMEHM AQNYTDKFPL IITRPFNYTG IGHAEHFLIP KIVKAYQDKK
TVIELGNLDV SREFNDVRDI CKIYLDLLLS EKDGITVNVC SGKTVSLMSI VSLMDQIAGY
KMNVKVNPAF VRENEIKDLS GDVSYLNDLV KPEFKYGIED TLRWMYGEIY D