| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1672 |
|---|
| Symbol | |
|---|
| ID | 3760950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 1825569 |
|---|
| End bp | 1826369 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637786409 |
|---|
| Product | DNA ligase |
|---|
| Protein accession | YP_391938 |
|---|
| Protein GI | 78486013 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCG CATACGCTGA TGCCAAAAAG CCGAAAATGC TGTTACTGGA GACGTATCAA
GAAAACCAAT CAGTGCTAGG TTGGTGGATG AGTGAGAAAC TGGATGGTGT TCGCGCAAAG
TGGAATGGAA AAGCTTTGAT TTCGAGAGGC GGTCATGAAA TTCACGCACC GGATTGGTTT
GTGGCCGACT TGCCAGCGTT TGAGCTGGAC GGTGAATTGT GGACGACGCG ACAGGATTTT
GAAAATGTGG TGTCGATTGT CCGGCAACAA CATCCAGATA GTCGATGGGA TGCTGTTTCC
TATCAAATTT TTGAGGTTCC TAATCAACTT GGTAATTTGA TGGATCGTTT AGCGGTGTTA
AAAAATTATC TGGCGAAGCA TCAGCTGACG CATGTGCAGA TTATTCCGCA AACAAAAATA
ATAAGTGAGG CCCAATTAAC GTCTGAATTT GATCGTTTGA CTGAAATCGG TGCGGAAGGA
CTGGTTTTAC GCGCCCCAAA TCAATCGTAT GAAACGGGTC GAAGTCGTCA AGCTTTGAAA
ATGAAGGCCT ATGAAGATGA TGAATGCCAA GTTGTGGGAT ATAAACCGGG GAAAGGAAAA
ATTTCCGGGT TGGTAGGCGC TTTGTTATGT GATTGGCACG GTAAGATGCA GCTGTCGATT
GGTTCTGGTT TGAGTTTACA AGAAAGAGAA CATCCGCCTG AAATCGGACA ATGGATTACG
TTTAAGTACT ATGGCCTGAC TGGATCTGGA AAACCACGAT TTCCTGTTTT TATGCGAATT
CGTTTAGATC AGGATATGTG A
|
|---|
| Protein sequence | MATAYADAKK PKMLLLETYQ ENQSVLGWWM SEKLDGVRAK WNGKALISRG GHEIHAPDWF
VADLPAFELD GELWTTRQDF ENVVSIVRQQ HPDSRWDAVS YQIFEVPNQL GNLMDRLAVL
KNYLAKHQLT HVQIIPQTKI ISEAQLTSEF DRLTEIGAEG LVLRAPNQSY ETGRSRQALK
MKAYEDDECQ VVGYKPGKGK ISGLVGALLC DWHGKMQLSI GSGLSLQERE HPPEIGQWIT
FKYYGLTGSG KPRFPVFMRI RLDQDM
|
|---|
| |