Gene Tcr_1628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1628 
Symbol 
ID3761925 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp1780882 
End bp1782336 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content47% 
IMG OID637786365 
Productglutamyl-tRNA(Gln) amidotransferase, A subunit 
Protein accessionYP_391894 
Protein GI78485969 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID[TIGR00132] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.013729 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATACTT TATCTGTTAA AGAAATGAGC GAAAAGCTCC GTAATAAAGA AATTACCAGT 
GTTGCATTAA CGCAGCATTA TTTAGACCGT ATTGATCAGT ATGATGGAGA ATTAAATGCT
TACGTCACGG TCACGCCGGA ATTGGCAATG GAAATGGCCA GGCAAGCGGA TGAGATGATT
GCGGAAGGCA AAGGTGGCTT GTTAACGGGC ATCCCGGTGG CGCACAAGGA TATCTTTTGC
ACGTTGGATG TGAAAACCAC GTGTGGTTCG AAAATGTTAG ACAATTTTAT TGCTCCTTAC
GATGCAAAAG TGGTTGAAGC TTCTCGAGCA TTGGGAATGC CTATTTTAGG GAAGACCAAC
ATGGATGAGT TTGCCATGGG GTCCTCTTCA GAAAGCAGTT ATTATGGGGC GACCAAAAAC
CCTTGGGATT TGAAAGCGGT TCCGGGTGGC TCTTCTGGTG GGTCGGCTGC TGTGATTGCG
GCCGGTTTGG CTCCTTTGGC TACCGGTTCC GATACAGGGG GCTCTATTCG TCAGCCCGCT
TCTTTCTGTG GTATAACCGG TATTAAACCG ACTTATGGCG CAGTATCGCG TTACGGCATG
ATTGCGTATG CGTCTAGTTT TGATCAAGGT GGGCCAATGA CGCGCTCTGC AGAAGAGTCG
GCTTGGTTAC TGGATGTTAT AGCCGGGTTT GATGAGCGAG ATTCAACCAG TCTTGAGCAA
CCAAAACAGG ATTATGTGTC CACTTTAAAT GATGACATCA AAGGTCTAAA AGTAGGTGTG
CCTGCAGAAT ACTTTGAAGA AGGGCTGGAT GATGGGGTCG CCTCAAACAT TCGTGCCGCC
ATTGCTGAAC TTGAAAAGCT GGGCGCCGAA ATTGTTGAGG TGAGTTTGCC CAATAAAGAT
TTAGCGGTGC CTGCCTATTA TGTTCTAGCC CCGGCAGAAG CCTCATCTAA CTTGTCGCGT
TTTGATGGTG TTCGTTATGG CTACCGTTGC GAGAACCCGA CTGATTTGAA TGATTTATAC
ACTCGTTCTC GTTCGGAAGG ATTTGGAGCG GAAGTGAAGC GTCGTATTAT GGTGGGGGCT
TATGCCTTGT CCGCTGGTTA TTACGATGCG TATTATTTGA AAGCGCAAAA GTTACGTCGA
ATGGTTAGAG ACGATTTTGT TAACGCATTC GAACAATGTG ATGTGATCGT TGGGCCAGTT
GCGCCTACAC CCGCTTTCAA TATTGGGGAA AAGTCTGATG ATCCGGTCAG TATGTATTTA
GCGGATCTAT ATACGATTCC TGTTAACTTG GCGGGCATGC CTGCGATGTC TGTCCCTGCC
GGTTTCTCAA ATGGTCGACC TGTCGGTCTT CACTTAGTCG GGCCTTATCA CAGTGAGGCG
AAGTTGCTGA ATGTTGCACA TCAATACCAG CAAGTGACGA ACTGGCATCA ACAAATGCCA
GAAAGCTATC AATAA
 
Protein sequence
MHTLSVKEMS EKLRNKEITS VALTQHYLDR IDQYDGELNA YVTVTPELAM EMARQADEMI 
AEGKGGLLTG IPVAHKDIFC TLDVKTTCGS KMLDNFIAPY DAKVVEASRA LGMPILGKTN
MDEFAMGSSS ESSYYGATKN PWDLKAVPGG SSGGSAAVIA AGLAPLATGS DTGGSIRQPA
SFCGITGIKP TYGAVSRYGM IAYASSFDQG GPMTRSAEES AWLLDVIAGF DERDSTSLEQ
PKQDYVSTLN DDIKGLKVGV PAEYFEEGLD DGVASNIRAA IAELEKLGAE IVEVSLPNKD
LAVPAYYVLA PAEASSNLSR FDGVRYGYRC ENPTDLNDLY TRSRSEGFGA EVKRRIMVGA
YALSAGYYDA YYLKAQKLRR MVRDDFVNAF EQCDVIVGPV APTPAFNIGE KSDDPVSMYL
ADLYTIPVNL AGMPAMSVPA GFSNGRPVGL HLVGPYHSEA KLLNVAHQYQ QVTNWHQQMP
ESYQ