| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1564 |
|---|
| Symbol | |
|---|
| ID | 3760823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 1713247 |
|---|
| End bp | 1715340 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637786300 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_391830 |
|---|
| Protein GI | 78485905 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.298375 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAAT CACCTCTCTA TATCGCTATA TTAGCAGCTT TATCCGCATC AACTCTTAGC
TCAGTGACTT ATGCCGAAAC GGATAAGTTG AAAAAAATAA TCGTTGCTGC ACCCGCTGAA
GAAGCCGCAC CGCAGGAAGA CGATCACACC CGCGCAGAGT TGTTGAAAAA TGGCAACAGT
GAAACTGGGG ACGTGCTTCG TCAAATTAAT GGCGTCTCAG CGGCTCGAAA AGGTGGACAT
GGTTTGGATC CTCAAATTCG AGGGCAACAA TATTCTCAAC TTAACATTCT TTTAGACGGC
GCCAAAATTG AAGGCGGATG CCCCAACAGA ATGGACCCAC CAACATCTTA CTCTGAAATA
TCTTCTTATG ATGACGTAGT CGTTATTCGA GGGGTTAACA GCGTTTTAAA TGGCCCGGGA
GGAAGCGGAG GCACCATTTT ATTTAACCGC CAAAAGCCGA CCTATAATCC TGAAAAAACC
GTGTCGGGGG AAGTGTCTGT CGGGAAATCA AATATCCTGA ACTATGAAAC CAATGCCGAA
GTTCAAGCGG TTGGCAAAAC AGGTTATGTT GTTGTTCAGG GCTCGCGTAA AGAAGCCAAC
AATTACACGG ATGGCAATGG TGATATCGTT AAATCGAGCT ATAACACAAA CCAAGGTCAC
ATCGATCTAG GCTGGACACC GAGTGAAAAC CATCATTTAA AACTTTCTGC CGAAAAAAGT
CGTACAGAAG ATGCCTTATA CCCTGGCGCG GCAATGGATG CCCCCGAAAC AGAAGGCACC
ATGCTACGAT TGAAGTACGA AGGTCGTCAA CTGTCTGAAA CCATCGCCGA TGTGGATGTG
GATTTATACC ACTCGACGGT TGACCATGTC ATGAATAACT TTGACCTCAG AACCCCACCT
TCCCCGATGA TGAAAAGAGA AACACCAACC TCCACAGAAT CGAATGGCGC AAAATTTAAA
TTAACCAGCC ATGTTGGCAA AACACAGTTC GATTACGGCC TGCAATTAGA AAGCATCAAT
AAAGATGCGA CCTTATGGAA TCGCTCAGTA ACGCCTAACA CTTCTTTAAA CTACATGTGG
CCTGATGTGA CGAACACCAC AAAAAGTCTG TTTGCCGAAA CCAACACCTT GCTCTCGCAG
CAAAGCAATT TAATTTTCGG GCTACGTTAT GATCAAGTTC ATGCCAAAGC CGATGACATC
AACACTGCAC CAACTGGCGC GCCCGGTAAT ATGCCGAGCT TGGTCTATGC CAAAACCTAT
AGTGATTACA ACGGTGAAAG CGCGGCCAAT GAAGATAACT TAAGCGGATT ACTCCGATTT
GAAAACACCT TCGCATCCAA CTATAAATGG TATCTTGGTG CTAGCCACAC CAAACGAACG
GCCGATGCAA CCGAACGATT CATGTCAAAA TGGGGCATGA TGGGGGGAAT ACAAACCAGC
TGGGTTGGCA ACCCGAATAT CAAACCGGAA CAGCATAACC AAATCGATTT AGGCATCGGT
CAAAAAACAG CTCAACTCAA CTGGAATGTT TCCGTTTGGT ATGACAAAGT CAATGACTAC
ATCCTCAGAG ACTTAGCCAC CAATCAATAT GATAATGGCG TTAAAATGAC GGCCAAAGAT
CAAACGGAAG TGTATGTTAA TGTCGATGCT GAACTGTACG GCGCGGATCT GGAAGCCGAT
TATAGAGTTA CATCGGCTTT TACGGCCGGA GGGCAATTCA GTTTAACGAA AGGTCGCAAT
ACAACCGACA ATCGAAATAT TGCTATGATT TCCGCTCCAA CAGGGTCATT ACACGCAATT
TATCGTCCGA GCAACTGGCA CTTAGGCGGA CGTTTTAACT TTGCACTGGA GCAAACAGAC
ATCGACAAAG CTTACACCCC CGAGGCGAAT CATGGCGAAA CACCGGCCTG GAGCACCTTA
GACATTTATG GCGGGTATCA ATTATCGAAA ACTTGGCAAA TCAATGCCGG TATCGATAAT
CTAATGGATC ATGCTTATTA TGATCACTTA AGTTATGATC CAGTCGACCC AACGGTTTAT
AAAAACAATG AACCGGGCCG TAATTATTGG GCAAAAGTGA CGGCCAAATT TTAA
|
|---|
| Protein sequence | MNQSPLYIAI LAALSASTLS SVTYAETDKL KKIIVAAPAE EAAPQEDDHT RAELLKNGNS
ETGDVLRQIN GVSAARKGGH GLDPQIRGQQ YSQLNILLDG AKIEGGCPNR MDPPTSYSEI
SSYDDVVVIR GVNSVLNGPG GSGGTILFNR QKPTYNPEKT VSGEVSVGKS NILNYETNAE
VQAVGKTGYV VVQGSRKEAN NYTDGNGDIV KSSYNTNQGH IDLGWTPSEN HHLKLSAEKS
RTEDALYPGA AMDAPETEGT MLRLKYEGRQ LSETIADVDV DLYHSTVDHV MNNFDLRTPP
SPMMKRETPT STESNGAKFK LTSHVGKTQF DYGLQLESIN KDATLWNRSV TPNTSLNYMW
PDVTNTTKSL FAETNTLLSQ QSNLIFGLRY DQVHAKADDI NTAPTGAPGN MPSLVYAKTY
SDYNGESAAN EDNLSGLLRF ENTFASNYKW YLGASHTKRT ADATERFMSK WGMMGGIQTS
WVGNPNIKPE QHNQIDLGIG QKTAQLNWNV SVWYDKVNDY ILRDLATNQY DNGVKMTAKD
QTEVYVNVDA ELYGADLEAD YRVTSAFTAG GQFSLTKGRN TTDNRNIAMI SAPTGSLHAI
YRPSNWHLGG RFNFALEQTD IDKAYTPEAN HGETPAWSTL DIYGGYQLSK TWQINAGIDN
LMDHAYYDHL SYDPVDPTVY KNNEPGRNYW AKVTAKF
|
|---|
| |