Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_1531 |
Symbol | |
ID | 3762261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 1668470 |
End bp | 1669690 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637786267 |
Product | secretion protein HlyD |
Protein accession | YP_391797 |
Protein GI | 78485872 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000000126911 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAGGTA CACAAATGAA AGGCTTTCTA GCGTCTCCCT TTTTAACAAC CAGCAAACTG CTTGTAACCC TTGGAATCGT TTCCAGCTTA ACCGCCTGTG ACATGCTTGG ACTAGGAGAA GATAAACCTC AGCAAGCCAT GCAAAAAAGA GTACCGCAAG TGGGTGTTCT GACGGTTAAA GAAACGACTG TACCTAAAAC CTTTTCCATG ACAGGGCGTG CGGAAGCTTA TGCCGTTGCA GAAATCCGCC CGCAAGTAGA AGGGATCGTT ACCGAACGTT TATTCAAAGA AGGATCTTTA GTTAAAAAAG GCGATATGCT TTATCAACTT GACGATGCCA GTTATCAGGC TTTATATGAA AATGCCAAAG CGGCCATTGC ACGCTCAAAA GCCTTATTAA CCAACGCTCA AATCAAAGTC AGCCGTAATG AACGCTTGGT TAAAATCAAT GCAGTCAGTG AACAAGTGCT TGATGATGCT AAAGCCTCCT TAAGAGAAGC CAAAGCCAAC TTGGCCGCCA ACCAGGCGGC TTTAAAAACT GCTTCAATCA ATCTTGAACG GACTCAAATC AAGGCGCCGA TCAGTGGTCG AATTGGGCGT TCCAGTGTCA CAAAAGGGGC TTTGGTCACA ACAAACCAAG CCACCTCTCT GGCCACCATT CAACAACTCA ACCCGATTTA CGTCGATTTT TCCGTTCCCT CGAATTACGC CATCATTTTG AGAAAAGCCA TGGCCAAGAA TGGCGGTCAG AACGAGGCGC AACATGAAGC CCATATTGTG TTTGAAGATG GAACGAAATA CGAACACACG GGGAAAATTC GTCTTTCCGA ATTTGAGGTC AACCGCTCAA CAGATGCGAT CATTTTAAGA ACCGAGTTTC CAAATCCCGA TGCAGTCCTC CTGCCAGGAA TGTTTTTGCA TGGTAATGTC ATCACAGGCT ACCAGAATGG GGTTTTCCTC GTCCCTACCT TAGCGTTGCA ACGCGATGCT GTCGGTAATG CGTTTGTGAT GACATTAAAC TCGGAAGGCG TTGTCACGGT TAAACCCGTC AAAGCTCAAG ACCTTTATGA AGATAAATGG ATTATCACAG AAGGCCTAAA AGCCGGTGAT CGCGTCATTA CCAAAGGGCT GCAATATATT CGTCCAGGCG TGAAAGCAAC AATCATTGGC GCATCAAAGC CTAAACAAGA CAACTCGTCA AACGCTAAAG AAGGACAATA A
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Protein sequence | MEGTQMKGFL ASPFLTTSKL LVTLGIVSSL TACDMLGLGE DKPQQAMQKR VPQVGVLTVK ETTVPKTFSM TGRAEAYAVA EIRPQVEGIV TERLFKEGSL VKKGDMLYQL DDASYQALYE NAKAAIARSK ALLTNAQIKV SRNERLVKIN AVSEQVLDDA KASLREAKAN LAANQAALKT ASINLERTQI KAPISGRIGR SSVTKGALVT TNQATSLATI QQLNPIYVDF SVPSNYAIIL RKAMAKNGGQ NEAQHEAHIV FEDGTKYEHT GKIRLSEFEV NRSTDAIILR TEFPNPDAVL LPGMFLHGNV ITGYQNGVFL VPTLALQRDA VGNAFVMTLN SEGVVTVKPV KAQDLYEDKW IITEGLKAGD RVITKGLQYI RPGVKATIIG ASKPKQDNSS NAKEGQ
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