Gene Tcr_1531 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1531 
Symbol 
ID3762261 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp1668470 
End bp1669690 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content46% 
IMG OID637786267 
Productsecretion protein HlyD 
Protein accessionYP_391797 
Protein GI78485872 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000126911 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGGTA CACAAATGAA AGGCTTTCTA GCGTCTCCCT TTTTAACAAC CAGCAAACTG 
CTTGTAACCC TTGGAATCGT TTCCAGCTTA ACCGCCTGTG ACATGCTTGG ACTAGGAGAA
GATAAACCTC AGCAAGCCAT GCAAAAAAGA GTACCGCAAG TGGGTGTTCT GACGGTTAAA
GAAACGACTG TACCTAAAAC CTTTTCCATG ACAGGGCGTG CGGAAGCTTA TGCCGTTGCA
GAAATCCGCC CGCAAGTAGA AGGGATCGTT ACCGAACGTT TATTCAAAGA AGGATCTTTA
GTTAAAAAAG GCGATATGCT TTATCAACTT GACGATGCCA GTTATCAGGC TTTATATGAA
AATGCCAAAG CGGCCATTGC ACGCTCAAAA GCCTTATTAA CCAACGCTCA AATCAAAGTC
AGCCGTAATG AACGCTTGGT TAAAATCAAT GCAGTCAGTG AACAAGTGCT TGATGATGCT
AAAGCCTCCT TAAGAGAAGC CAAAGCCAAC TTGGCCGCCA ACCAGGCGGC TTTAAAAACT
GCTTCAATCA ATCTTGAACG GACTCAAATC AAGGCGCCGA TCAGTGGTCG AATTGGGCGT
TCCAGTGTCA CAAAAGGGGC TTTGGTCACA ACAAACCAAG CCACCTCTCT GGCCACCATT
CAACAACTCA ACCCGATTTA CGTCGATTTT TCCGTTCCCT CGAATTACGC CATCATTTTG
AGAAAAGCCA TGGCCAAGAA TGGCGGTCAG AACGAGGCGC AACATGAAGC CCATATTGTG
TTTGAAGATG GAACGAAATA CGAACACACG GGGAAAATTC GTCTTTCCGA ATTTGAGGTC
AACCGCTCAA CAGATGCGAT CATTTTAAGA ACCGAGTTTC CAAATCCCGA TGCAGTCCTC
CTGCCAGGAA TGTTTTTGCA TGGTAATGTC ATCACAGGCT ACCAGAATGG GGTTTTCCTC
GTCCCTACCT TAGCGTTGCA ACGCGATGCT GTCGGTAATG CGTTTGTGAT GACATTAAAC
TCGGAAGGCG TTGTCACGGT TAAACCCGTC AAAGCTCAAG ACCTTTATGA AGATAAATGG
ATTATCACAG AAGGCCTAAA AGCCGGTGAT CGCGTCATTA CCAAAGGGCT GCAATATATT
CGTCCAGGCG TGAAAGCAAC AATCATTGGC GCATCAAAGC CTAAACAAGA CAACTCGTCA
AACGCTAAAG AAGGACAATA A
 
Protein sequence
MEGTQMKGFL ASPFLTTSKL LVTLGIVSSL TACDMLGLGE DKPQQAMQKR VPQVGVLTVK 
ETTVPKTFSM TGRAEAYAVA EIRPQVEGIV TERLFKEGSL VKKGDMLYQL DDASYQALYE
NAKAAIARSK ALLTNAQIKV SRNERLVKIN AVSEQVLDDA KASLREAKAN LAANQAALKT
ASINLERTQI KAPISGRIGR SSVTKGALVT TNQATSLATI QQLNPIYVDF SVPSNYAIIL
RKAMAKNGGQ NEAQHEAHIV FEDGTKYEHT GKIRLSEFEV NRSTDAIILR TEFPNPDAVL
LPGMFLHGNV ITGYQNGVFL VPTLALQRDA VGNAFVMTLN SEGVVTVKPV KAQDLYEDKW
IITEGLKAGD RVITKGLQYI RPGVKATIIG ASKPKQDNSS NAKEGQ