Gene Tcr_1504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1504 
Symbol 
ID3761724 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand+ 
Start bp1630772 
End bp1631446 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content38% 
IMG OID637786235 
ProductSH3-like region 
Protein accessionYP_391770 
Protein GI78485845 
COG category[T] Signal transduction mechanisms 
COG ID[COG3103] SH3 domain protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0000000015461 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGCCG TTAGTGCATC AGCAGTCACT TATAGTTCAG CGGCTCTTTC TGAAGTTCAG 
TCGGGTTATA CGCATTATGT AACGGATTCC ATTGAAATAC CGTTTAGAAG TCAACCGGGT 
TATAAATACA AAATCTTGAG AATGCTCAAG TCAGGCACAA AAGTCACAAT TCTAGAAGTG 
AATGATGATG GTTGGGCAAG ACTGATTTAC AACCATAATG GTAAAGACAT TGAGGGTTGG 
ATGCCGTCAA GTGTTCTTCA AAATCAGCCT ATTGCCAAAG TTCAAGTGCA AAAACAAGAA 
CGTAAAATAG CCAAGATTGA AAAAGAACTG AACCAGTTAA ACCTGGAAAA GAACACTCTT 
CAAAATCGCT TTAACGATAC GGCTAAAGAG TTAAAAGAAG TTAAACAGGA TAATTTCGAA 
CTCAATAAGC AACTAGAAGA AATCAAAGCG ATTTCAGGCA ATGCCATTCA GCTTAACAAT 
GAAAACAAGC AAATGGCACA ACAAATTGAG AAGCTTAATA ATGAAAACGC CATCATGAAA 
GAACAAATTG ACCAAGCCAA AGACGTTGTT CAACGCCAAT GGTTCTTAAC AGGAGGTGGG 
GTTTTATTAC TTGGTCTTCT ACTAGGCCGC TTTTTCAGAG TGCCTAATCG TAAAAATAAA 
TGGAACACTT TATAA
 
Protein sequence
MIAVSASAVT YSSAALSEVQ SGYTHYVTDS IEIPFRSQPG YKYKILRMLK SGTKVTILEV 
NDDGWARLIY NHNGKDIEGW MPSSVLQNQP IAKVQVQKQE RKIAKIEKEL NQLNLEKNTL 
QNRFNDTAKE LKEVKQDNFE LNKQLEEIKA ISGNAIQLNN ENKQMAQQIE KLNNENAIMK 
EQIDQAKDVV QRQWFLTGGG VLLLGLLLGR FFRVPNRKNK WNTL