| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1490 |
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| Symbol | |
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| ID | 3761612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1610595 |
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| End bp | 1613051 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637786221 |
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| Product | ribonuclease R |
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| Protein accession | YP_391756 |
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| Protein GI | 118139519 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACTGACA CAAACAAAAA TGAGAATGAA AGTTTAGAGC CGTCTGTAGA GCAAGTTGAG
ACGATGACTG AATCACACCC TTCTAATAAT CAAGATGCGT CCACAGGTGA AGATATGATT
GCGGACCCGC ATGCCGATAG AGAAGCCGAT AAATACGAAA ACCCTATTCC AAGTCGAGAG
TTCATCATTG AACTTTTAGA GAAAGAGCAA AAGCCTCTCA GAATCAAACA GATTGCGACC
ATTTTGGACA TTGATGACGA TGAGCGCTTT GAAGCGTTAT CACGTCGTTT AAAAGCCATG
GTTCGAGATG GGCAAATCTT GCGTAATCGA CGCGGTGCTT TCGGTTTGAT CCAGAAGATG
GATCTGATTA AAGGGAAGGT TATCGGTCAT CCAGGTGGTT TTGGCTTTGT GCAACCGGAA
GAAGGGGGCG GAGACCTGTT CTTAGGTGAC CGTGAAATGC ATAAGGTATT CCACGGTGAC
AAGGTTATTG CCTCTGTAAT CGGGGTTGAC CGTAAAGGTC GACGTGAAGG GATGATTGTT
GAGATCATCG AGCATGCAAA CCAAACCATT TTAGGGCGTC TTCATATGGA AGATGGACTC
GGTTGGGTTC AGCCAAATAA CAATAGAATT GCACAGGATA TCTTTATTCC TCAAGACGGG
CTTCTTGACG CTGAGGAAGG ACAAATTGTC ATGGTGGAGG TAATCCACCA GCCAACGAAG
CGTTCAAGTG CGATTGGTAA AATTATTGAA GTGGTTGGTG ATTATCTTGC ACCGGGCATG
GAAATAGATT CTGCAATTCA TGCTTACGAT ATTCCAAATG AATGGCCGCA AGAATTACTA
GATCAGTTAG AGGCCATTCC AGACGAAGTC ACACAAGAAG ATAAAGAAGG TCGTAAAGAC
TTGCGCAGTT TGCCATTAGT TACCATTGAT GGGGCAGACT CTAAAGACTT TGATGATGCT
GTTTTTGCGA AACGTCGTAA AAATGGTTGG CGACTTGTGG TGGCGATTGC GGATGTCTCG
CATTATGTCA AAGAAGGCAC ACCGCTTGAT AAAGAAGCCT ATGAACGCGG AAACTCTGTT
TACTTCCCGC AAAAAGTGGT TCCGATGTTG CCGGAAAAAC TGTCTAATGA TCTTTGTTCG
CTGAATCCAA ATGTCGACCG CCTGTGTATG GTATGTGACA TGTCCATTGA TAACGATGGA
AAACTGGAAA GAACGCAGTT TTATGATGCG GTCATGAATT CAAAAGCACG TCTGACATAC
GATCAAGTGC ATGAGATGTT GACGGATAAA GGGTCCGAGC ATCGCAAAAC CTTTAAAGAT
GTTGTGCCAA ATGTCGAAGA TCTGAATGAT CTATATGAGA TTTTAAAGGG AGCTCGTTCC
GAGCGTGGCG CGTTAGAATT TGATACGACA GAAACGCGCA TTGTATTTGA CGAACACCGT
AAGATTGAAA AGATTGTGCC GGTTGTTCGT AATGAAGCAC ATAAGCTGAT TGAAGAATGT
ATGTTGATGG CGAATGTCGC GACAGCACGT TATTTGAAAT GGCATAAAAT TCCGATGTTG
TATCGTGTCC ATGAAAAACC GTCGGAAGAA CGTTTGAAGA ACTTAAGAAC GTTCTTAGGT
GATTTCGGTC TGACGCTTGA AGGCGGTGAC GAACCAGATG CGAACGATTA TGCTACGATT
ACCGAAGCGG TTAAAGGTCA GCCGCATGAA CATTTGGTTG GTACGGTATT GCTGAGAAGC
ATGAACCAAG CGGTTTATCA GCCTGATAAT CTAGGTCACT TTGGGTTGAA CTATGAGTAT
TATGCGCACT TTACTTCTCC AATTCGCCGT TACCCTGATT TATTGATTCA TCGTGCCATT
CGTTTTGCCT GGACAAAACA AGATGTCAGT AAGTTTAAAT ATTCTGAAAA AGATATGAAG
GCGCTTGGTG AACATTGTTC TGGGACGGAG CGTCGTGCAG ATGAAGCCAC ACGTGATGCG
GTCACTTTCT TGAAGTGCGA ATTCTTGTCT CACCGTTTGG GTGAAGAATA TGATGCAGTC
GTTACCGCTG CAACCAACTT TGGTCTGTTT GTTGAGCTTG AACCTTTGTA TGTTGAAGGG
TTAGTGCATA TTACAGAGCT TGGAGAAGAT TACTTCCATT ATGATGCTTC TCGTCATTGC
CTGAAAGGCG AGCGTACGGG TAAAGTCTAC CGTCTAGGCG ATAAGTTGCG TGTTCAAGTG
GCTCAAGTGA ATCTGGACGA TCGTAAGATT GATTTACGAT TTTTATCCGG AGGCGGGGAC
TCTTCTGACG AACAAGCGCC GATAGAAACT AAAGCAGCTG ATACGTCAGA TTCAAAACCA
GCTGAAGAAG CGCCTTCGCA AGAAGATGGT GACGCACCTA AAAAGAAAAA GAAACGTTAT
TATCGTAAAA AAGGCGGCGG TCGCAATCGT AAGAAAAAAT CGAGCGCTGC CGAGTGA
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| Protein sequence | MTDTNKNENE SLEPSVEQVE TMTESHPSNN QDASTGEDMI ADPHADREAD KYENPIPSRE
FIIELLEKEQ KPLRIKQIAT ILDIDDDERF EALSRRLKAM VRDGQILRNR RGAFGLIQKM
DLIKGKVIGH PGGFGFVQPE EGGGDLFLGD REMHKVFHGD KVIASVIGVD RKGRREGMIV
EIIEHANQTI LGRLHMEDGL GWVQPNNNRI AQDIFIPQDG LLDAEEGQIV MVEVIHQPTK
RSSAIGKIIE VVGDYLAPGM EIDSAIHAYD IPNEWPQELL DQLEAIPDEV TQEDKEGRKD
LRSLPLVTID GADSKDFDDA VFAKRRKNGW RLVVAIADVS HYVKEGTPLD KEAYERGNSV
YFPQKVVPML PEKLSNDLCS LNPNVDRLCM VCDMSIDNDG KLERTQFYDA VMNSKARLTY
DQVHEMLTDK GSEHRKTFKD VVPNVEDLND LYEILKGARS ERGALEFDTT ETRIVFDEHR
KIEKIVPVVR NEAHKLIEEC MLMANVATAR YLKWHKIPML YRVHEKPSEE RLKNLRTFLG
DFGLTLEGGD EPDANDYATI TEAVKGQPHE HLVGTVLLRS MNQAVYQPDN LGHFGLNYEY
YAHFTSPIRR YPDLLIHRAI RFAWTKQDVS KFKYSEKDMK ALGEHCSGTE RRADEATRDA
VTFLKCEFLS HRLGEEYDAV VTAATNFGLF VELEPLYVEG LVHITELGED YFHYDASRHC
LKGERTGKVY RLGDKLRVQV AQVNLDDRKI DLRFLSGGGD SSDEQAPIET KAADTSDSKP
AEEAPSQEDG DAPKKKKKRY YRKKGGGRNR KKKSSAAE
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