Gene Tcr_1446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1446 
Symbol 
ID3760793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp1563633 
End bp1564733 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content41% 
IMG OID637786177 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_391712 
Protein GI78485787 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.396101 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGAAG AGCGTTTATC CTCTTTGGTT GGTAATGGAC CAGCCATGCA ACAAGTTAAA 
AAACTTATAC AACAGGTTGC GAAAACCGAT GCGACCGTCT TGATTCTCGG GGAATCAGGA 
ACGGGTAAAG AAGTCGTTGC TCAATCCTTA CACTCCGTAT CCGATCGATT TGATCGAGCC 
TTTATTCCTA TTAATTGCGG CGCCATTCCT GGTGAGTTGT TAGAATCAGA ATTATTCGGT 
CACGAAAAAG GTGCCTTTAC AGGAGCGATT ACCGCTCGTA AAGGTCGTTT TGAAATGGCT 
GAAAAAGGTA CGATTTTCTT AGACGAAATT GGCGATATGC CTTTGCCGAT GCAAGTTAAA 
CTTCTGCGTG TTCTGCAAGA AAGAATGTAT GAACGTGTCG GCGGAAATAA AAGTTTTGAG 
TGTGACGTCA GAGTGATTGC GGCGACGCAT CGAAACTTAG AAGACAATAT TTCAGATGGA 
ACATTTCGTG AAGACTTGTT TTATCGATTA AATGTTTTTC CTATCGAAAT GCCTTCTTTA 
AGAGAGCGTC CCGAAGATAT CCCCGAATTG TTTGATTTTA TGTTTAATAA AATTCAAAGC 
TCAGGGCGAA CCATTCCTAA ACTATCTGAA AAAGCGATGA TTGCTCTACA ACGTTATAGC 
TGGCCTGGTA ATGTTCGAGA ACTGGGCAAC CTGGCTGAGC GTCTGTCTAT TTTATTCCCA 
GACTTAACTG TCGATTACGA TGATTTGCCC GTTAAATATC AGGTTGAATT GGAAGAGGAT 
GCTTCCTTGA TTCGTGTTGA TTCAACAATA TTAGAATCTG CAAAACCTGA TGTCAGCGAC 
AGTATGTCCG AGATTGCATT GAGCGTGACC GAACCAGAAA CCACGCAGCA AATGATGGAA 
AACTCGGAGA ATACCTCATC TCTTGGCATG CCCGATTTAG ATTCTGGGTT GGATTTAAAG 
TCTTATTTGG TGGAAATGGA AGTACAGTTA ATTCAAAAAG CACTGGTGCA AACGGATGGA 
AATGTTTCTC AAGCTGCTAA ACTGTTGCAG ACGAACCGTA CTACGTTGGT CGAAAAAATC 
CGTAAATTTA ATCTGAGTTA A
 
Protein sequence
MKEERLSSLV GNGPAMQQVK KLIQQVAKTD ATVLILGESG TGKEVVAQSL HSVSDRFDRA 
FIPINCGAIP GELLESELFG HEKGAFTGAI TARKGRFEMA EKGTIFLDEI GDMPLPMQVK 
LLRVLQERMY ERVGGNKSFE CDVRVIAATH RNLEDNISDG TFREDLFYRL NVFPIEMPSL 
RERPEDIPEL FDFMFNKIQS SGRTIPKLSE KAMIALQRYS WPGNVRELGN LAERLSILFP 
DLTVDYDDLP VKYQVELEED ASLIRVDSTI LESAKPDVSD SMSEIALSVT EPETTQQMME 
NSENTSSLGM PDLDSGLDLK SYLVEMEVQL IQKALVQTDG NVSQAAKLLQ TNRTTLVEKI 
RKFNLS