| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1427 |
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| Symbol | |
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| ID | 3761686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1540620 |
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| End bp | 1541921 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637786159 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_391694 |
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| Protein GI | 78485769 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAAA TATTGCTAGC AATTGCTCTG AGCGTGCTTA CTAATCCAGC CTTCAGTCAA
GATAAAGAAT CACAAAATGA CCATCCTCGT GCACATGATC ATGAAACAGA AACCAACTCC
AAAGTACATA TCGAAAAGAA AGAGAATGCT GAACATCCTG AAGAAAGCCA CCAAGAGCAT
GCTACACATG ATGCGCACCC GTCAGGTGCT TCACATCTGC ATGATGAACA TCAAGGGCAA
TTAGATCGTG GACACGATAA CGAAAATAAT GCGCACGGTA GTCATAAAGA TATCAACTCA
ACGACACTCA AACCTGAGCA AATAAAACTG GCTGATATTC AAGTAGAGCT TCTTACTGCT
CAGCGAGTCA ATTATCAACT TTATGCTCCT GGAGAAATTC TATCCAACGA CTATACCAGT
TACAGCGTAT CGCCACGAGT CGCTTCAATC GTGTTGCGGC GCCATGTTTC TTTGGGGGAT
CACGTAAAAT CTGGACAACG ACTCGTTACC TTATTTAGCG AAAGTGTCGC CGAAGAACAG
ACTAACTACC GTGTGGCTTG GACTGAATGG CAAAGATTGC AAAAGCTAGG ACGCAAAAAT
GTTGGGGAAC AGCGATATAT CAGTGCTAAG TCTACCCTAG AAAAGGCCGA AGCGAAACTG
CTATCCTATG GGTTGTCAAA AGCAAATTTA CAATCCCTTA CTTCTCAGAA GTCCGCTTCA
TTGGGAGAGT ATACCCTTAA TGCCGAAATT GATGGTGTTG TGCTTAGTGA CAAATTCAAG
CAAGGGCAGC GGATTGGAGC TGGTCAACCC TTAATTTCTC TTGCTGATGA AAAACAGCTA
TGGGTCGAAG CTCAACTACC CGCCAACATG AATTTAAATT TAGAAAAAGG AGCGCAAGCG
GAAGTCGTCA TTGGCATGAT GCATGTGAAA GCTTCAGTTA TTCAAGAGTC GCACACGATT
GATTCGGTTA CTCGTACGCG CACTGTGCGA CTTTTGGTCA ATAATCCAGC GCACCGTTTG
CATCCAGGTC AGTTTGCTGA GGTTTATTTT CATTTTAGTA CACAGCAGCC AGTGCTGGCG
GTGCCTGAAA CAGCGCTGAT GCGTAGTGAA GACGGTGACT GGGTGGTATT TATGGAAGAG
CATCCAGGGG AGTTTAAGCC AGTAGAAGTT CAGTTAGGCC GAGCGTTGGG ACCACTTCGT
GAAATCATTG GCATTGAGCC CGGGCAACAT ATTGTCACCC AAGGAGCTTT TTTTGTTGCG
TCTCAGATCG CCAAGGGCGG TTTTGATCCT CATAACCACT AA
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| Protein sequence | MNKILLAIAL SVLTNPAFSQ DKESQNDHPR AHDHETETNS KVHIEKKENA EHPEESHQEH
ATHDAHPSGA SHLHDEHQGQ LDRGHDNENN AHGSHKDINS TTLKPEQIKL ADIQVELLTA
QRVNYQLYAP GEILSNDYTS YSVSPRVASI VLRRHVSLGD HVKSGQRLVT LFSESVAEEQ
TNYRVAWTEW QRLQKLGRKN VGEQRYISAK STLEKAEAKL LSYGLSKANL QSLTSQKSAS
LGEYTLNAEI DGVVLSDKFK QGQRIGAGQP LISLADEKQL WVEAQLPANM NLNLEKGAQA
EVVIGMMHVK ASVIQESHTI DSVTRTRTVR LLVNNPAHRL HPGQFAEVYF HFSTQQPVLA
VPETALMRSE DGDWVVFMEE HPGEFKPVEV QLGRALGPLR EIIGIEPGQH IVTQGAFFVA
SQIAKGGFDP HNH
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