Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_1331 |
Symbol | |
ID | 3760693 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | - |
Start bp | 1445465 |
End bp | 1447342 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637786063 |
Product | protein-export membrane protein SecD |
Protein accession | YP_391600 |
Protein GI | 78485675 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0264501 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTGAGT CAAGACAAAA AGTCATTAGT AATCAATACC CGGCGTGGAA ATATCTGCTG CTGCTAATTG TGTTGGTATT AGGTGTTATT TATGCCGCAC CGAATATTTT TGGAGACGAT CCGGCTGTTC AGATTTCACC GGCAAAATCG GTTCAGTTTG ATGCCTCTAC TGAAGACCTT GTGACGCAAA CACTTCAGAA AGCGAGCCTA AAGCCAAAAT CAATGGCGTA TCAAAACGGT CAATTTCTGA TTCGTTTCCA TAATACAGAT GAGCAAATGA AAGCCCGGAG CGCTCTGAAA GAAGTCATGG GTCGTCAAGC GGTGGTGGCC TTGAACCTAG CGCCGGCCAC TCCTGATATC TTAAGAGCAG TCGGTGGTGA ACCCATGTAT TTAGGGTTGG ACCTACGCGG CGGTGTGCAT TTCTTGATGG ATGTCGACAT GGAAGCTGCA GTGCAGAAAA CGTATAACCG TTATGTTGAC GAAGTAAAAG GAGCTTTCAG AGAAGCTCGA ATCCGTTACT TAAGCGTTTC TTATGAAACC GATCATTTAA TGATTAAGTT TCGGGACGCT AAAAGTGTTT CCGCTGCGCA AGCAGAAATG GAAAAACAAT TTCCGGGCGA ATTTAACTTA GCGCCAGTGG ATGGGCAGAA TGCATTAGAA CTTCGCTTAC AGCCTAAAAC GATTGAAGAA GCGAAAACCT ATGCTTTGAA GCAGAATATC ACCACCTTGC GTAATCGTAT TAACGAATTA GGTGTGGCAG AGCCGGTTAT TCAACAGCAA GGGGATCGTC GTATTGTGGT TCAGTTGCCA GGTGTGCAAG ACACAGCCAA AGCAAAAGAA ATCTTAGGGG CAACCGCAAC ACTGGAATTC AGACTGGTTG AAGAACGTGG CGATGCTTAC CGTGCTGAAA AAACGGGTTA TGCACCGAAT GGATCGCGTT TATACCACTT CCGAGATGGT CGTCCTATCT TATTGAAACG CAGCATTATC GTCAGTGGTG ACAACGTCAT TAATGCTCAG TCCGGGATTG AAACGGAATC GGGTTCTGCT CAAGTCACCG TCACACTTGA TGGCGCGGGT GGGCGTAAGA TGCTGGCAAC CACTAAGGAA AATATCGGCC ATCGTATGGC GGTGGTTTAC ATTGAGAATC GCGTTGAAAC CATTGAAAAA AATGGTGAAA AAGTTAAAAA ACGTATTACC ACTAAAGACG TGATCAATGC CGCGGTGATT CGTGGGCAGT TTGCTAACCG GTTCCAAATT ACCGGGTTAG ACAGCCCGCA AGAAGCACAA GACTTGGCAT TGCTACTGCG TGCTGGGGCA CTGGCGGCAC CAATGGAAAT TGTTGAAGAA AGAACCGTTG GGCCAAGCCT TGGGCAAGAC AACATCAACC AAGGGATGAT GTCGGTTATT GTCGGCTTCT TATTGGTGTT GGTGATTATG GTTTGGCGTT ATAAAACGCT CGGCATGATT GCCAATATGG CGTTAACGTT GAATCTGATT CTGATTGTCG CGGTGTTGTC CTTGTTACAA GCCACATTGA CCTTACCGGG GATTGCCGGG ATCGTTCTCA CCGTAGGGAT GGCGGTGGAC GCGAATGTGC TCATTTTTGA GCGTATCCGT GAAGAACTAA GAACGTCATC CGTTCAATCG GCCATCAATG CCGGTTATGA AAAAGCATTC GTAACAATTG CCGATGCCAA CATCACAACC TTGTTGGCGG CACTGGTATT ATTCAGTTTC GGAACAGGCC CGATCAAAGG CTTTGCCATT ACGTTATCGA TCGGGATTAT TACTTCTATG TTTACAGCCA TCTTGGGGAC AAGAGCAATT GTGAATGCGC TCTACGGCAA TAAGCCGGTA GAAAAGTTAT CGGTTTAG
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Protein sequence | MFESRQKVIS NQYPAWKYLL LLIVLVLGVI YAAPNIFGDD PAVQISPAKS VQFDASTEDL VTQTLQKASL KPKSMAYQNG QFLIRFHNTD EQMKARSALK EVMGRQAVVA LNLAPATPDI LRAVGGEPMY LGLDLRGGVH FLMDVDMEAA VQKTYNRYVD EVKGAFREAR IRYLSVSYET DHLMIKFRDA KSVSAAQAEM EKQFPGEFNL APVDGQNALE LRLQPKTIEE AKTYALKQNI TTLRNRINEL GVAEPVIQQQ GDRRIVVQLP GVQDTAKAKE ILGATATLEF RLVEERGDAY RAEKTGYAPN GSRLYHFRDG RPILLKRSII VSGDNVINAQ SGIETESGSA QVTVTLDGAG GRKMLATTKE NIGHRMAVVY IENRVETIEK NGEKVKKRIT TKDVINAAVI RGQFANRFQI TGLDSPQEAQ DLALLLRAGA LAAPMEIVEE RTVGPSLGQD NINQGMMSVI VGFLLVLVIM VWRYKTLGMI ANMALTLNLI LIVAVLSLLQ ATLTLPGIAG IVLTVGMAVD ANVLIFERIR EELRTSSVQS AINAGYEKAF VTIADANITT LLAALVLFSF GTGPIKGFAI TLSIGIITSM FTAILGTRAI VNALYGNKPV EKLSV
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