Gene Tcr_1331 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1331 
Symbol 
ID3760693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp1445465 
End bp1447342 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content46% 
IMG OID637786063 
Productprotein-export membrane protein SecD 
Protein accessionYP_391600 
Protein GI78485675 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0264501 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTGAGT CAAGACAAAA AGTCATTAGT AATCAATACC CGGCGTGGAA ATATCTGCTG 
CTGCTAATTG TGTTGGTATT AGGTGTTATT TATGCCGCAC CGAATATTTT TGGAGACGAT
CCGGCTGTTC AGATTTCACC GGCAAAATCG GTTCAGTTTG ATGCCTCTAC TGAAGACCTT
GTGACGCAAA CACTTCAGAA AGCGAGCCTA AAGCCAAAAT CAATGGCGTA TCAAAACGGT
CAATTTCTGA TTCGTTTCCA TAATACAGAT GAGCAAATGA AAGCCCGGAG CGCTCTGAAA
GAAGTCATGG GTCGTCAAGC GGTGGTGGCC TTGAACCTAG CGCCGGCCAC TCCTGATATC
TTAAGAGCAG TCGGTGGTGA ACCCATGTAT TTAGGGTTGG ACCTACGCGG CGGTGTGCAT
TTCTTGATGG ATGTCGACAT GGAAGCTGCA GTGCAGAAAA CGTATAACCG TTATGTTGAC
GAAGTAAAAG GAGCTTTCAG AGAAGCTCGA ATCCGTTACT TAAGCGTTTC TTATGAAACC
GATCATTTAA TGATTAAGTT TCGGGACGCT AAAAGTGTTT CCGCTGCGCA AGCAGAAATG
GAAAAACAAT TTCCGGGCGA ATTTAACTTA GCGCCAGTGG ATGGGCAGAA TGCATTAGAA
CTTCGCTTAC AGCCTAAAAC GATTGAAGAA GCGAAAACCT ATGCTTTGAA GCAGAATATC
ACCACCTTGC GTAATCGTAT TAACGAATTA GGTGTGGCAG AGCCGGTTAT TCAACAGCAA
GGGGATCGTC GTATTGTGGT TCAGTTGCCA GGTGTGCAAG ACACAGCCAA AGCAAAAGAA
ATCTTAGGGG CAACCGCAAC ACTGGAATTC AGACTGGTTG AAGAACGTGG CGATGCTTAC
CGTGCTGAAA AAACGGGTTA TGCACCGAAT GGATCGCGTT TATACCACTT CCGAGATGGT
CGTCCTATCT TATTGAAACG CAGCATTATC GTCAGTGGTG ACAACGTCAT TAATGCTCAG
TCCGGGATTG AAACGGAATC GGGTTCTGCT CAAGTCACCG TCACACTTGA TGGCGCGGGT
GGGCGTAAGA TGCTGGCAAC CACTAAGGAA AATATCGGCC ATCGTATGGC GGTGGTTTAC
ATTGAGAATC GCGTTGAAAC CATTGAAAAA AATGGTGAAA AAGTTAAAAA ACGTATTACC
ACTAAAGACG TGATCAATGC CGCGGTGATT CGTGGGCAGT TTGCTAACCG GTTCCAAATT
ACCGGGTTAG ACAGCCCGCA AGAAGCACAA GACTTGGCAT TGCTACTGCG TGCTGGGGCA
CTGGCGGCAC CAATGGAAAT TGTTGAAGAA AGAACCGTTG GGCCAAGCCT TGGGCAAGAC
AACATCAACC AAGGGATGAT GTCGGTTATT GTCGGCTTCT TATTGGTGTT GGTGATTATG
GTTTGGCGTT ATAAAACGCT CGGCATGATT GCCAATATGG CGTTAACGTT GAATCTGATT
CTGATTGTCG CGGTGTTGTC CTTGTTACAA GCCACATTGA CCTTACCGGG GATTGCCGGG
ATCGTTCTCA CCGTAGGGAT GGCGGTGGAC GCGAATGTGC TCATTTTTGA GCGTATCCGT
GAAGAACTAA GAACGTCATC CGTTCAATCG GCCATCAATG CCGGTTATGA AAAAGCATTC
GTAACAATTG CCGATGCCAA CATCACAACC TTGTTGGCGG CACTGGTATT ATTCAGTTTC
GGAACAGGCC CGATCAAAGG CTTTGCCATT ACGTTATCGA TCGGGATTAT TACTTCTATG
TTTACAGCCA TCTTGGGGAC AAGAGCAATT GTGAATGCGC TCTACGGCAA TAAGCCGGTA
GAAAAGTTAT CGGTTTAG
 
Protein sequence
MFESRQKVIS NQYPAWKYLL LLIVLVLGVI YAAPNIFGDD PAVQISPAKS VQFDASTEDL 
VTQTLQKASL KPKSMAYQNG QFLIRFHNTD EQMKARSALK EVMGRQAVVA LNLAPATPDI
LRAVGGEPMY LGLDLRGGVH FLMDVDMEAA VQKTYNRYVD EVKGAFREAR IRYLSVSYET
DHLMIKFRDA KSVSAAQAEM EKQFPGEFNL APVDGQNALE LRLQPKTIEE AKTYALKQNI
TTLRNRINEL GVAEPVIQQQ GDRRIVVQLP GVQDTAKAKE ILGATATLEF RLVEERGDAY
RAEKTGYAPN GSRLYHFRDG RPILLKRSII VSGDNVINAQ SGIETESGSA QVTVTLDGAG
GRKMLATTKE NIGHRMAVVY IENRVETIEK NGEKVKKRIT TKDVINAAVI RGQFANRFQI
TGLDSPQEAQ DLALLLRAGA LAAPMEIVEE RTVGPSLGQD NINQGMMSVI VGFLLVLVIM
VWRYKTLGMI ANMALTLNLI LIVAVLSLLQ ATLTLPGIAG IVLTVGMAVD ANVLIFERIR
EELRTSSVQS AINAGYEKAF VTIADANITT LLAALVLFSF GTGPIKGFAI TLSIGIITSM
FTAILGTRAI VNALYGNKPV EKLSV