| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1297 |
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| Symbol | |
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| ID | 3760679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1413690 |
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| End bp | 1416365 |
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| Gene Length | 2676 bp |
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| Protein Length | 891 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637786029 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_391566 |
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| Protein GI | 78485641 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.112988 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGATAA TCACCTTTGT CATTATTGGT GTTTATATTG ATGACCAACA AGAAAAACTT
CAGCAAAAAG CCTACACGAA TAAAACCCAA GAAATTCAAG ACCTGATTAA AACGCTCATT
GAAAACAAGC AAGAGAAGGT TTCTTTAATC ACGTTATCTT TGGCACAAGA CAATAAGTTA
CAAAATGCAC TTTTAAATGA AAATAACCAA CTGTCGTATG ATAACTATTT GAATACATTA
GCAAAAGAAT CTGATTTTAA AAACATTTGG CTTCACATTA TTGACAAACA AGGCCGAAGC
TTTTATCGAA GTTGGACACA AACACATGGC GACAACATTT TAGACAAGCG CTTGGATTTG
CAAAAAATGT TTAAAGATCC AAAGCCCATG CAAACCATCA GTACTGGCGT TTATGATCTT
ACCTTCAAAT CCAGTGTGCC TATTTTTCAT CATAAAAAGT TTATTGGGGT GTTTGAAACC
ATTGCCAAGT TCAACTCCAT CGCATTCAAG CTCAAACAAA AAAACATCGA TCCAGTTTTT
TTAGTGGATA AAAGTTATCA CGCACAACTT AAAAGACCCT TTACCCAAAC CTTTTTAGAC
GACTATTACG TTGCGAACTT AAATGCCAAT CCGGAACGCA TTCAGGACAT CAAGCAAAAT
CGACTTATTC AATACAGTCA TCAACCTCTT CACGCTTCCT ATTACGTCGA CCAACAAAAA
CAGCAACTAA TCACTTATTA CAACCTGCCC AATCTGAATA ATGAACCAAT GGGACATTTC
TTTTTATTTT ATCCTCTGGA TAAAATCGAA ACCGATCAGC TGTCAGCCAA TAAATTCAGC
CTCTACTTTT ATGCGGCAAT TGGATATTTA TTCTTTTTAA TCATTTATTT CTACCAACTT
AATAAACGTG AAAAAACTCA AATTACCGAA TTCAATCAAC GCCTAACCGA ATCTGTTCAC
CAAAAAACGC GTCAACTAAC GCATCAGAAA TATTTCTTAC AAAACGTTAT TGATGGCGTC
TCGGATTCCG TCGTGGTTTA TGATAAAAAC CTCTCCATTA CCATGAAAAA TAAGGCCGCT
GAACAGCTAA TAGGGTTAAC CTCATCGTCA AAACAATACA GTCATGGTGT GAATGAAAAC
AACCAAAATC ATGATTACTT GGAAACAGTC ATTAAGTGCT TAAAATCAGC CAAACCTGAA
AAAACCGTGC ATCACTTCAT TGACCAGAAC CAAACGTCTC GTTATTTCGA ATTTACCGTG
ACCCCCTTGG TGGATGGCAG CGGTCAACTT AATTCCGTCA TTCAACTTGG GCATGAAATC
ACTAATTATT TAGACATCCA AGAACAACTC CAGCAACAAA AAAACGATTT GGATTTCATT
GCCTACCATG ATCCGTTAAC CGATTTACCA AATCGTATTC TCTTTCTTGA TCGCTTAACC
CAAGCCATTC ATCAAGCACA ACGTAATCAT GACAAAGTTG CTTTACTGTT TATCGATCTG
GATCGTTTCA AAGAAATCAA TGACTCCTTT GGTCACGCCA GCGGAGATTT GGTTCTCATT
GAATGCGGAA AACGTCTTAA AAAAGCCATT CGTGAAATTG ATACCGTCGC CCGCCTAGGA
GGCGATGAGT TTACGATTTT GATTGATGAG CTGAAAACCA ACAACGTCAT CATCAATGTG
GTCAAAAAAA TTATTAAAAC ACTTTCTGAT CCGATCTTTG TTAACGAAAA TATCTTTCAT
ATAACGGCCA GCATTGGCAT CAGTATCTTC CCCAACGATG GAACCGACGC CAATCAATTA
TTACAAAATG CCGATGCCGC GATGTATCAA GCAAAAGAAG ACGGTAAAAA CACTTATCAC
TTCTACACCA AAGAAATGAC CGAACAGGCC TATAATCGCT TGCTGATGGA AAACAATTTA
CGTGACGCCC TAGACAACCA ACAGTTTGAA CTGTATTACC AACCTCAAGT GGACATTACA
ACCAATAAAA TTGTTGGTTT TGAAGCATTG GTTCGCTGGA ATCACGAACA AAAAGGCATT
ATCCCGCCCG ATCATTTCAT CCCTTTAGCG GAAGAAACGG GGCTCATTAT ACCGTTAGGA
AAACAAATCA TTGCGATGGC TTCTCAAACC ATTTCTGAAT GGCATCAAGC CAATTTAACG
AATGCACGAA TTGCCATTAA CGTTTCCGCT AAACAGTTGC GAGACAGTCG TTTTTTCCAC
AACCTAAATA CGGCTTTAAA CAAAAATAAC TGCCAACCAG ATTGGATTGA AATTGAAATA
ACGGAAAGTT CCGTCATGCA GAACCCGGAA CTGGCCATCA AGCTCTTAAG CAAACTCAGA
CGAAAAGGCA TCACCATCTC TATCGATGAT TTTGGAACAG GCTACTCCTC TTTAGCTTAT
TTAAAGAAGC TCCCCATCAC CAAAGTCAAA ATAGACCGAT CCTTTGTTTC GAATTTACCT
CAGGATAAAG ATGATGCTGA AATCACCAAA GCCATTATCT CGATGAGCCA GAGTCTAAAC
TTAGACATTA TTGCTGAAGG GATAGAAACA CAGGAACAGC AAAATTTTGT GCTCCAAGAA
GGCTGCAAAT TGATTCAAGG CTATTACTAC AGCCGCCCAC TCACCAAAAA AGCAATGACG
GCAAAACTTG AAAGCCTTCA ATCAAACAAA ACTTAA
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| Protein sequence | MLIITFVIIG VYIDDQQEKL QQKAYTNKTQ EIQDLIKTLI ENKQEKVSLI TLSLAQDNKL
QNALLNENNQ LSYDNYLNTL AKESDFKNIW LHIIDKQGRS FYRSWTQTHG DNILDKRLDL
QKMFKDPKPM QTISTGVYDL TFKSSVPIFH HKKFIGVFET IAKFNSIAFK LKQKNIDPVF
LVDKSYHAQL KRPFTQTFLD DYYVANLNAN PERIQDIKQN RLIQYSHQPL HASYYVDQQK
QQLITYYNLP NLNNEPMGHF FLFYPLDKIE TDQLSANKFS LYFYAAIGYL FFLIIYFYQL
NKREKTQITE FNQRLTESVH QKTRQLTHQK YFLQNVIDGV SDSVVVYDKN LSITMKNKAA
EQLIGLTSSS KQYSHGVNEN NQNHDYLETV IKCLKSAKPE KTVHHFIDQN QTSRYFEFTV
TPLVDGSGQL NSVIQLGHEI TNYLDIQEQL QQQKNDLDFI AYHDPLTDLP NRILFLDRLT
QAIHQAQRNH DKVALLFIDL DRFKEINDSF GHASGDLVLI ECGKRLKKAI REIDTVARLG
GDEFTILIDE LKTNNVIINV VKKIIKTLSD PIFVNENIFH ITASIGISIF PNDGTDANQL
LQNADAAMYQ AKEDGKNTYH FYTKEMTEQA YNRLLMENNL RDALDNQQFE LYYQPQVDIT
TNKIVGFEAL VRWNHEQKGI IPPDHFIPLA EETGLIIPLG KQIIAMASQT ISEWHQANLT
NARIAINVSA KQLRDSRFFH NLNTALNKNN CQPDWIEIEI TESSVMQNPE LAIKLLSKLR
RKGITISIDD FGTGYSSLAY LKKLPITKVK IDRSFVSNLP QDKDDAEITK AIISMSQSLN
LDIIAEGIET QEQQNFVLQE GCKLIQGYYY SRPLTKKAMT AKLESLQSNK T
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