| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1239 |
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| Symbol | |
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| ID | 3761795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1353221 |
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| End bp | 1355239 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637785971 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_391508 |
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| Protein GI | 78485583 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00267622 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGATC AAAAAGCCTA TCAAAAGCTG GTTGAATCGT TAAATCAGCA CAGCTACCAG
TATTATGTGC TGGACGATCC TATCATCAGT GACCCTCAAT ATGATGTGCT CTATCAAAAG
TTGTTGAGGA TTGAAGACGA ACATCCAGAC TGGATTCTTC CGGAATCGCC CAGTCAGCGT
ATTGGAGACG AGCCTTTAAA AGAATTTCAT ACCGTGCGCC ATGCCGTGCC GATGTATTCA
TTAGACAATG CATTTGAAGA TGACGAACTG AAAAGTTTTT TAAAACGTAT TGAAGAAAAA
TTGCCTGATC AGAAATCGTT AGCCTTTTCC GCTGAACCTA AAATGGATGG CTTGGCGATC
AATATCCGCT ATGAAAACGG CCAGTTGGTT CAAGCCACCA CGCGTGGCGA TGGACAAGTG
GGGGAAGATG TCACGCATAA TATCCGCCCG ATTTATTCTG TCCCTTTAAA GTTGTTTGGT
AACAACTGGC CGGAAGTGGT TGAAGTTCGT GGCGAGGTGT TCATGTCAAA GTCGGCGTTT
GAGCAGTTGA ATGAACACCA ACAAGAAATC GGTGGAAAGA TTTTTGCCAA TCCGAGAAAT
GCCGCGGCAG GCTCGTTACG TCAACTCGAT TCCAAGGTGG CCGCGAAACG TCATCTCAGC
TTCTTTTTGT ATGGCTGGGG AGAGTTAAGT GACGACTGGC AATTGCCACA GTATTATTCT
GAAATGATCG AGCAGTTAGT CGAATGGGGC TTGCCAGCCA ATCCGCAGTC TGAAATCATC
AGCGGGTTGG AAGGCATGTT TGCTTATTAT GAAAAAATTC AAGCGAAGCG TTCCGAGCTG
CCTTATGAAA TTGATGGTAT TGTTTATAAA TTGAACGATA TTAAACTGCA ACAACAGCTA
GGGTTTACTG CACGAGCGCC AAGATGGGCC ATTGCCAGAA AGTTTCCAGC CGAAGAAGTG
TGGACGAAAT TGCTGGATAT AGAAGTGCAG GTCGGGCGCA CAGGTGCGAT TACTCCTGTG
GCGCGATTAC AGCCTGTCTC AGTCGGCGGT GTGATTGTTT CCAATGCGAC ACTGCACAAT
ATGGATGAAA TCAAACGCAA GGACGTTCGT ATTGGTGACA CCGTAATTGT GCGTCGCGCC
GGAGATGTCA TTCCCGAAGT GGTTGGGCCA ATACTGACCC AGCGACCAGA AAATACGCAA
CTGTTTGAAA TGCCACAGCA CTGTCCTGAA TGTGGTTCGG ATGTGGTTAA AGAGTTGGAT
AAAGCGGTTT TTCGTTGTAC AGGTGGTTTG GTCTGTCCTG CACAGCGCAA GCGTGCCCTA
CATCATTTTG TTTCGCGAAA AGCGATGGAC ATTCAAGGGT TGGGTGATAA GTTAATTGAT
CAGTTGGTGG ATAAAGGATG GGTTAAACAT CCCGATGACT TTTACCATTT AACGGTTGAA
AAACTGGCCA CATTAGAACG GATGGCTGAA AAATCCGCAC AAAATGTTAT TACAGGTATT
CAGGCTTCCT TGGAAACCAC TTTGGCGAAG TTTATTTACA GCTTGGGCAT TCCAGAAGTA
GGGGAGGTGA CCGCTAAAAA TTTAGCAAAT CATTTCAAAG ATTTGAACGC TATTAAACAA
GCCGAATTTG AAGAGTTAAT CACGTTGAAT GATGTGGGTG AAGTGGTAGC GGAACACATT
GTGAACTTCT TTAAAGAACC TCATAATGAA TCGGTTATTC AAGGATTGCT CGATGCGGGA
ATGCATTGGC CAACACCGGA AACCACTCTT GTTAATGAAG ATTCACCGTT TGCCAATAAA
GTGGTTGTTT TGACAGGTAC CTTGTCTGAA ATGAGCCGAC CAGAAGCCAA AGTGTTGCTT
GAAGCGCAAG GCGCTAAAAT CACGGGGAGC GTGTCGGCCA AAACCGATTA TGTGATTGCC
GGCGAAAAAG CAGGCTCAAA ATTGACCAAA GCAGAGTCTT TGGGTGTGGC TGTTTTGAGT
GAGGCAGAAT GGCTTGCAAT GATGCCGCAA CAAGATTAA
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| Protein sequence | MQDQKAYQKL VESLNQHSYQ YYVLDDPIIS DPQYDVLYQK LLRIEDEHPD WILPESPSQR
IGDEPLKEFH TVRHAVPMYS LDNAFEDDEL KSFLKRIEEK LPDQKSLAFS AEPKMDGLAI
NIRYENGQLV QATTRGDGQV GEDVTHNIRP IYSVPLKLFG NNWPEVVEVR GEVFMSKSAF
EQLNEHQQEI GGKIFANPRN AAAGSLRQLD SKVAAKRHLS FFLYGWGELS DDWQLPQYYS
EMIEQLVEWG LPANPQSEII SGLEGMFAYY EKIQAKRSEL PYEIDGIVYK LNDIKLQQQL
GFTARAPRWA IARKFPAEEV WTKLLDIEVQ VGRTGAITPV ARLQPVSVGG VIVSNATLHN
MDEIKRKDVR IGDTVIVRRA GDVIPEVVGP ILTQRPENTQ LFEMPQHCPE CGSDVVKELD
KAVFRCTGGL VCPAQRKRAL HHFVSRKAMD IQGLGDKLID QLVDKGWVKH PDDFYHLTVE
KLATLERMAE KSAQNVITGI QASLETTLAK FIYSLGIPEV GEVTAKNLAN HFKDLNAIKQ
AEFEELITLN DVGEVVAEHI VNFFKEPHNE SVIQGLLDAG MHWPTPETTL VNEDSPFANK
VVVLTGTLSE MSRPEAKVLL EAQGAKITGS VSAKTDYVIA GEKAGSKLTK AESLGVAVLS
EAEWLAMMPQ QD
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