Gene Tcr_1229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1229 
Symbol 
ID3761785 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp1346702 
End bp1347370 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content46% 
IMG OID637785961 
Productpeptidase M50 
Protein accessionYP_391498 
Protein GI78485573 
COG category[R] General function prediction only 
COG ID[COG1994] Zn-dependent proteases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.0000000000442117 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGAAT TAACAGTGAT GCAGAAAATT GCGATTTGGA CGATTCCCGT TCTGATGGCT 
ATTACTTTGC ACGAAGCAGC TCATGGCTGG GTGGCCTCTA AGTTAGGGGA TAAAACCGCT 
TTAATGCTCG GGCGTGTCAC GTTAAACCCT TTAAAGCATA TTGACCCTAT CGGTACGGTT 
GTGGTGCCAA TCACTCTGTT AGTGCTCGGT GGGTTTGTGT TTGGTTGGGC GAAAGCGGTG 
CCGATTAACG CGCGTAATTT TAAAAACCCG TCTGTTGATA TGGCTTGGGT GGCCATTGCC 
GGACCGCTTT CGAATTTTCT CATGGCCATC GGCTGGGCAT TTATTGCAAA GTTAGGTTAT 
GACTTATCTG CAGGTGACGT ATCGCCAGAC AATATCGGTC AATTCCTAAC CTATTCCGGG 
ATGGCGGGAA TTGCCATTAA TCTGGTATTG ATGGTGCTCA ATATGATTCC AATTCCTCCG 
CTTGACGGAA GCCGAGTTTT ATCTGCGCTG TTGCCTGCAC GTATAGCGTA TTCATACAAT 
CGTTTAGAGC CTTATGGTTT CTTTATTTTA TTAGGTCTCT TGCTTCTCGG TGTGCTTGGC 
CCTATTATCT CTGGCCCGTA TCAAGCGTTA CAGGGTTATT TACTCCAAAT GGTAGGACTA 
TCGTCATGA
 
Protein sequence
MIELTVMQKI AIWTIPVLMA ITLHEAAHGW VASKLGDKTA LMLGRVTLNP LKHIDPIGTV 
VVPITLLVLG GFVFGWAKAV PINARNFKNP SVDMAWVAIA GPLSNFLMAI GWAFIAKLGY 
DLSAGDVSPD NIGQFLTYSG MAGIAINLVL MVLNMIPIPP LDGSRVLSAL LPARIAYSYN 
RLEPYGFFIL LGLLLLGVLG PIISGPYQAL QGYLLQMVGL SS