Gene Tcr_1225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1225 
Symbol 
ID3761781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp1343603 
End bp1344265 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content46% 
IMG OID637785957 
Productanti-sigm factor, ChrR 
Protein accessionYP_391494 
Protein GI78485569 
COG category[T] Signal transduction mechanisms 
COG ID[COG3806] Anti-sigma factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.00201902 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCAATC GATCCGAAGC TCTTAATATG GATTTCACAC AAAAAGTGGT CGTGGAAACC 
GAAAAAATGG ATTGGGTCGG CAGTCGTGCA GACAATGTGT TGCGCAAACC GCTGGAAAGA 
GAATTCGCTG AATCCGGCAG GGCGACCAGC ATTGTTCAGT TTTTACCCGG CGCCAGCTTT 
CCACCACACC AGCATGATTT GGGCGAAGAA ATCTTTGTGT TAGAAGGTGT CTTTTCCGAT 
GAAAACGGTG ATTATCCGGC CGGCACTTAT TTACGCAATC CACCCGGCTC AATTCATTCG 
CCGCACTCCA AAGAAGGGTG TGTCATTTTT GTGAAATTGG AACAGTTTTC ACCAGAAGAC 
ACCGAGCAGG TGGTATTGAA TACGAATCAA GCCATCATGC AGCCAGGTAT CGGTAATTTA 
GAAGTATTGA GTTTACACAG CTTTCAAACA GAGCATTCCG CACTGGTGTA TTGGCCACCG 
GGTGAAAAGT TTCAGCCGCA TCACCATTGG GGTGGGGAAG AGATTTTTGT TTTAAAAGGT 
GAGTTTATTG ACGAGCATGG TCGTTACCCA AGAGGCACGT GGATTCGAAG CCCGCATCTA 
AGCTTGCACG ACCCTTACGT AGAAGAAGAA ACTTTGATCT ACGTTAAAAC AGGGCACTTA 
TAA
 
Protein sequence
MSNRSEALNM DFTQKVVVET EKMDWVGSRA DNVLRKPLER EFAESGRATS IVQFLPGASF 
PPHQHDLGEE IFVLEGVFSD ENGDYPAGTY LRNPPGSIHS PHSKEGCVIF VKLEQFSPED 
TEQVVLNTNQ AIMQPGIGNL EVLSLHSFQT EHSALVYWPP GEKFQPHHHW GGEEIFVLKG 
EFIDEHGRYP RGTWIRSPHL SLHDPYVEEE TLIYVKTGHL