| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1222 |
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| Symbol | |
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| ID | 3761778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1338894 |
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| End bp | 1341341 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637785954 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_391491 |
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| Protein GI | 78485566 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGCAAA ACTTTTTAAC GGTAAAACAT TGGCTGCTTG GGAGCGTACG CCGTCAATTG
GTGGTTGGAA TGGTTGTGGT GGTGTCGACA CTGCTTGCAA TCTTTATTTG GGAGGTCACC
CGCGAACAGC AAAATGTCAT GCAAGAGCTA AAAATTGACC AAGCAAAAGG ATTGGCACAG
AATGTCGCTA CTTCGACCGC AGTATGGGTC GCATCTCGTG ATTTTTCCGG GCTACAGAAT
ATAATTAATG GGCTCAACAA ATATCCGGAT ATAACGCATG CGATGGTACT GAATCTCAAC
AATCAGGTTT TAGCCCATAA CGACTTATCA CATCGCGGGC AATATTTATT GGACATGCCA
GCCAAACCAG AAATGACGGT GCTTCATTTG AACAAAGATT ATATTGATCT GGTGAACCCC
ATTATGCTGT CGGGCCAACA TATTGGCTGG GTACGCATCG GATTAAGCCA ATCCGCTGAC
CTTAAACGAT TTGAGAAAAT CAAGTTTTCG GCGTTTGCAT TCCTCTTAAT TGCAGTCACC
TTGGCGGCTC TGTTCGCAAC TGTAGCGGCG CGTTACTTAA CCCGACGACT CTATGCCATT
CAAACCGTTG CAGATGAGGT AAAACAAGGT AAACGTTCAT TACGAGTAAA ATTAGACGGC
GTTGATGAAG CCGCTCAACT AGCTAAGCGC TTTAATATCA TGCTTGATAC TTTGGTAAAG
CGCGAAAATG AAATTGTTGA ATCGCATCAG GCTTTAGAGC AAAGTGAAAA ACGCTTAAAC
CAAATTATGG CGGTTAACCA TGAAGGTATT TGGGATTGGG ACATTAAAGC AGACAAGGTG
ACTCACAACC AAAGTTGGGC GGACATGATT GGATTAGACG ATAACTTGCT GGTGCATCCG
GCACAAGTTT TCTTTGATGC GGTACACCCT GATGACCGTG AAAGAGTCAG TCGTGCTGTA
GGTGAATGTT TTAAATCTAA AAGCCATTAC CACATGGAAT ACCGCTTTGT ACAAAGGAAC
ACAGGTAAAG AGGTGTGGGT GCAAGATCGC GGTGATGTGG TTGAGTGGGA TGCTGAGGAA
AATCCTTTAC GAATGGTTGG GGGTTTTTAC GAAGTCACAG AACGAAAGAA AGCCGAAGAA
GCGATTCAAA ACTTGGCGTT TTATGATCCA TTGACACAAC TCCCTAACCG CCGCTTATTA
CAAGATCGTT TACAGCAAGA GATGGCGGTT ACCGAACGAA GCAAACATGT TTGTGCCTTA
ATGTTTATTG ATTTGGATGA TTTTAAAACA TTAAACGATA CACTTGGACA CGACACCGGA
GATAAATTAC TTCGCCAAGT GGCAACTAGG TTAAGGGAGA ATGTTCGAGA ATTTGATACG
GTCGCACGTA TTGGAGGAGA TGAATTTGTC TTAATATTGC CTAGTTTGGA TGATGACTGG
AAAGATGCTG CTACCCACGC GGAATTGGTC GCACAAAAAG TTTTACGTGT ACTGAATAAA
CCTTATTTGC TGGATTCAAC TCCCTACCAC AGCACGCCCA GCATTGGGGT GAAACTGTTT
TCCGGTCACC AAGAAACGTT GGAAGAATTA CTGAAACATG CTGATTTGGC GATGTATCAA
GCTAAAGCCA AAGGTCGAAA CACCGTTCGT TTTTATGACA CAACCATGCA AGAAGTGGTG
AATGCAAAAT CGGTAATGGA AGCCAGCATG CGTCAAGCGA TTACAGGTCA ACAATTTGTG
TTGTTCTACC AGCCTCAAAT TAACAGCAAT GGACAAATCA TTGGTGCAGA AGCTTTAGTG
CGTTGGCGCC ATCCCCAAAA AGGGTTGATT GCTCCTAATA AATTTATTCC ATTGGCGGAA
GAAAATGGCT TTATCTTATC GATAGGCCGT TGGGTTTTAC AAACCGCTTG TGAACAGTTA
GTTGAATGGG CGCGTCAGCC TGCTACAGCA CAGATAACCA TGGCCGTCAA TGTCAGCGCT
CGTCAATTCC ATCAAATCGA TTTAGTGGAA GAGGTTGAAC GTATTATCTG TCAAACTGGC
GCAAATCCGC AGTTGTTAAA ATTAGAATTA ACCGAAAGCT TATTAGTCAA GGACATCGAA
GATGTGGTTG ATAAGATGCA AGCTCTTAAA AAGTTAGGCG TTAGTTTTTC ATTGGATGAT
TTTGGTACGG GCTACTCCTC TTTGGCTTAT CTAAAGCGTC TGCCATTAGA CCAACTAAAA
ATTGATCAAA CCTTTGTACG TGATATTATT GACGACAGCA ATGATGCCGC AATTGCTCGA
GCTGTTATTG CATTGGCCAA GAGTATGGAA TTTAATGTGA TCGCAGAAGG CGTGGAAAAC
ATTGAACAAC ATCAAATGTT AATTGATATG GGCTGTCGAG TTTTTCAAGG GTATTTATTT
GGTCGTCCCG TGCCGATTGA AGAATTTTTT CAAAATACAG CACTCTAG
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| Protein sequence | MKQNFLTVKH WLLGSVRRQL VVGMVVVVST LLAIFIWEVT REQQNVMQEL KIDQAKGLAQ
NVATSTAVWV ASRDFSGLQN IINGLNKYPD ITHAMVLNLN NQVLAHNDLS HRGQYLLDMP
AKPEMTVLHL NKDYIDLVNP IMLSGQHIGW VRIGLSQSAD LKRFEKIKFS AFAFLLIAVT
LAALFATVAA RYLTRRLYAI QTVADEVKQG KRSLRVKLDG VDEAAQLAKR FNIMLDTLVK
RENEIVESHQ ALEQSEKRLN QIMAVNHEGI WDWDIKADKV THNQSWADMI GLDDNLLVHP
AQVFFDAVHP DDRERVSRAV GECFKSKSHY HMEYRFVQRN TGKEVWVQDR GDVVEWDAEE
NPLRMVGGFY EVTERKKAEE AIQNLAFYDP LTQLPNRRLL QDRLQQEMAV TERSKHVCAL
MFIDLDDFKT LNDTLGHDTG DKLLRQVATR LRENVREFDT VARIGGDEFV LILPSLDDDW
KDAATHAELV AQKVLRVLNK PYLLDSTPYH STPSIGVKLF SGHQETLEEL LKHADLAMYQ
AKAKGRNTVR FYDTTMQEVV NAKSVMEASM RQAITGQQFV LFYQPQINSN GQIIGAEALV
RWRHPQKGLI APNKFIPLAE ENGFILSIGR WVLQTACEQL VEWARQPATA QITMAVNVSA
RQFHQIDLVE EVERIICQTG ANPQLLKLEL TESLLVKDIE DVVDKMQALK KLGVSFSLDD
FGTGYSSLAY LKRLPLDQLK IDQTFVRDII DDSNDAAIAR AVIALAKSME FNVIAEGVEN
IEQHQMLIDM GCRVFQGYLF GRPVPIEEFF QNTAL
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