Gene Tcr_1210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1210 
Symbol 
ID3760628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp1322570 
End bp1323643 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content46% 
IMG OID637785938 
ProducttRNA-dihydrouridine synthase A 
Protein accessionYP_391479 
Protein GI78485554 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00742] tRNA dihydrouridine synthase A 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0000000269604 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCTCA AAAATTCTTT ATTAACCCCT AATTCAATAC GCTCCAGTGC TTCTCAATTC 
AGTGTCGCAC CGATGCTGGA CTGGACCGAT CGGCACTGCC GAGTCTTCCA TCGTCAACTC 
ACAAAACATG CCTGGTTATA CAGCGAAATG GTCACGACGG GCGCTATTAT TTACGGCAAT 
AATTTAGAAC GTTTTCTTGG ACATTCGGAG ATGGACAGTC CTGTGGTTTT GCAACTTGGC 
GGTTCGAATC CAGAAGAGTT GGCTCATTGT GCCAAGCTTG GAGAAGAGTG GGGCTATTCG 
GAAATTAATT TAAATGTAGG GTGTCCTTCC GATCGTGTTC AAAACAATAT GATTGGCGCG 
TGTTTGATGG CGCACCCAAA CATTGTTGCG GATGCGGTCA GTGCTATGAA AACTGCTGTT 
AAAGAGATTC CTGTGACCGT TAAAAGCCGT ATCGGGATTG ATGAGCAGGA AGACTTTGAC 
ACTTTGGTCG AATTTGTTTC GGCCATTCAG ACAGCCGGAG TGGATGGCGT AATCATTCAT 
GCGCGTAAAG CCTGGTTACA AGGGCTGTCT CCGAAAGAAA ACCGAGATGT GCCACCTTTG 
AAATACGACT GGGTGCGCCA AATCAAAGCC TTGTTCCCCG AATTAGAGAT TGCCATTAAT 
GGAGGCATCC AAACCCCGCA AGCCGGGCTG AATTTTTTAG AAATTTTAAA GGACGATGAA 
CAATCGTTGC CCGCTGTCGA TGGTGTTATG CTCGGGCGAG CTGTGTACGA AAAACCTTAT 
TTATTGACGG AAGTGGATGC GCTTTATTAT GATGATGCTT CACCTGTAAA AAGTCGAGAA 
GCGGTGTTGG AAGCAATGTA CCCTTATATT GAAAATCATT TGACGCAAGG CGGTAAATTA 
AATCAAGTGA GTCGTCACAT GCTGGGATTG TTTGCAGGTC TGCCTGGTGG GCGTATGTGG 
CGCCGATATA TTTCAGAAAA TGCCTTTAAA TCGGGCGCCG GCATTGACGT GTTGCAAGAA 
GCTTATCGAC GTGTTGTGAA CGAAATTCAA CGAATGGAAG AGCAAAATCG ATGA
 
Protein sequence
MSLKNSLLTP NSIRSSASQF SVAPMLDWTD RHCRVFHRQL TKHAWLYSEM VTTGAIIYGN 
NLERFLGHSE MDSPVVLQLG GSNPEELAHC AKLGEEWGYS EINLNVGCPS DRVQNNMIGA 
CLMAHPNIVA DAVSAMKTAV KEIPVTVKSR IGIDEQEDFD TLVEFVSAIQ TAGVDGVIIH 
ARKAWLQGLS PKENRDVPPL KYDWVRQIKA LFPELEIAIN GGIQTPQAGL NFLEILKDDE 
QSLPAVDGVM LGRAVYEKPY LLTEVDALYY DDASPVKSRE AVLEAMYPYI ENHLTQGGKL 
NQVSRHMLGL FAGLPGGRMW RRYISENAFK SGAGIDVLQE AYRRVVNEIQ RMEEQNR