| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1198 |
|---|
| Symbol | rpsA |
|---|
| ID | 3760616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 1311327 |
|---|
| End bp | 1313000 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637785926 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_391467 |
|---|
| Protein GI | 78485542 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAT TATCTTTCGC TGAATTATTT GAGCAGTCTT TACAAGAAGA CAAATTCCAA
ACAGGTTCTT TGATTATCGG AACCGTTGTC GGTATCGACA AAGAAACTGT CCTAGTTGAC
GCAGGTATGA AATCTGAGTC GGCTATTCCT AAGTCACAAT TTGAAGATGC TAACGGAGAA
CTTGAAGTTG CCGTTGGTGA CGAAGTTGAA GTTTACCTAG AAACGCTAGA AGATGGTTTC
GGTGAAACTC GTTTATCTCG TGAAAAAGCT AAGCGTGCTA AGACTTGGGA TCGTTTGGAA
ACAGCTCTAG AAGATAGCGA AACTGTAACT GGTCTAGTGA CTGGTAAAGT TAAAGGCGGC
TTAACAGTTG ATGTTGAAGG CGTTCGTGGT TTCCTTCCTG GTTCACTTGT GGATGTACGT
CCTATCCGTG ACTTCGGTTT CCTAGAAGGT AAAGAAGTAG AACTTAAGCT GGTTAAACTG
GACCGTAAGC GTAACAACGT TGTTGTTTCT CGTCGTGCCG TTATCGAAGC TGAGAATTCT
GTTGAGCGTG AAGCACTTCT TGCAAACATG GAAGAAGGGT CAGTTCTACA AGGTATCGTT
AAGAACCTAA CAGACTACGG TGCCTTTATT GATTTAGGTG GTATCGATGG TCTATTGCAT
ATTACAGATA TGGCATGGCG TCGTGTTAAC CATCCTTCAG AAGTCATCCA AGTTGGTGAT
GAGATCGAAG TTAAGGTATT GAAGTTCGAC AGAGAGAAAA ACCGTGTTTC TCTAGGCATG
AAACAACTTC AAGAAGATCC ATGGTCAGAT ATGGTTGCAC GTTACCCAAT TGGTTCAGAA
ATCATGGGGA AAGTTGCGAA CATCACAGAC TACGGTGCTT TCATTGAAAT CGAAGATGGT
ATTGAAGGGC TTGTTCACAC GTCTGAGCTG GATTGGACTA ACCGTAACAT TCACCCATCT
AAAGTGGTCC ACCTCGGTCA AGAAGTTAAA GTTAAAATCT TGGATGTTGA TCAAGAACGT
CGTCGTATTT CATTGTCTAT TAAGCAATGT ACGGTTAACC CTTGGGAAGC TTTCTCTGCA
ACGCATTCTA AAGGTGACAA AATCTCTGGT AGCATCAAAT CTATCACTGA TTTCGGTATC
TTCATTGGTC TAGATGGCAA CATCGATGGT CTTGTTCACT TAACAGATAT TTCTTGGTCT
CAGTCTGGCG AAGAAGCGGT TCGTGAATTC AAGAAAGGTG ATGAGCTAGA AACAGTGATT
CTATCAATCG ATCCTGAACG TGAGCGTATT TCTCTTGGTC TTAAACAACT AGAGCAAGAT
CCTTTCGGTG AATTTGTTGC TGAAAATGGC AAAAACAGCA TCGTAACAGG TACGGTTAAA
TCTGTTGATG AAAAAGGCGC CGTAATTGAT CTAGCGGAAG AAGTTGAAGG TTACCTTCGC
GCTTCTGAAT TAGATGAAGA TACACGTGAT GCGAGCTCAG TGTTGAAAGT CGGTGATTCT
GTTGAAGCTA AGATTGTTAA TGTTGATCGT AAAAACCGTA ATGTTTCGCT ATCTATCAAA
GCAAAAGCGA TGCAAGATGA AGCGAATGCA GTTAAAGACT ATTCAGCAAA ACAACCTCAA
GCTCAAAACA CTTTAGGGGA CTTGTTAAAA GGTCAACTTT CTTCTGAAGA TTAA
|
|---|
| Protein sequence | MSELSFAELF EQSLQEDKFQ TGSLIIGTVV GIDKETVLVD AGMKSESAIP KSQFEDANGE
LEVAVGDEVE VYLETLEDGF GETRLSREKA KRAKTWDRLE TALEDSETVT GLVTGKVKGG
LTVDVEGVRG FLPGSLVDVR PIRDFGFLEG KEVELKLVKL DRKRNNVVVS RRAVIEAENS
VEREALLANM EEGSVLQGIV KNLTDYGAFI DLGGIDGLLH ITDMAWRRVN HPSEVIQVGD
EIEVKVLKFD REKNRVSLGM KQLQEDPWSD MVARYPIGSE IMGKVANITD YGAFIEIEDG
IEGLVHTSEL DWTNRNIHPS KVVHLGQEVK VKILDVDQER RRISLSIKQC TVNPWEAFSA
THSKGDKISG SIKSITDFGI FIGLDGNIDG LVHLTDISWS QSGEEAVREF KKGDELETVI
LSIDPERERI SLGLKQLEQD PFGEFVAENG KNSIVTGTVK SVDEKGAVID LAEEVEGYLR
ASELDEDTRD ASSVLKVGDS VEAKIVNVDR KNRNVSLSIK AKAMQDEANA VKDYSAKQPQ
AQNTLGDLLK GQLSSED
|
|---|
| |