Gene Tcr_1171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1171 
Symbol 
ID3760316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand+ 
Start bp1276938 
End bp1277564 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content43% 
IMG OID637785895 
Producthypothetical protein 
Protein accessionYP_391440 
Protein GI78485515 
COG category[S] Function unknown 
COG ID[COG2860] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.534638 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTAG TCCAAACGCT TTATTACCTT GATTTACTGG GAACCGTTGT CTTTGCGATG 
ACTGGTTTGC TGGCGGCCAG CCGAAAACAA TTGGATCTAT TTGGCGCGAT TGTCATCGCC 
ATGGTGACGG CTGTCGGCGG AGGAACCTTG CGCGATTTGA TTTTGGACCA ACCCGTCTTT 
TGGGTTGAGC ATAATATTTA TATTTATGTC GTTGTTTTTT CAACACTTTT CTTGTTCTTC 
TACGCGCGTA TAAAAGAAAT TCCCGTCAAA TTACTGCTAT ACCTTGATGC GCTTGGTTTG 
GCCGTTTTCA GCGTGATAGG AGCGCAAAAA GCCATGGCAC TAGGCTTGTC CGACCCAATT 
ATCATTATGA CCGGCGTTAT GACCGGCGTG GTCGGCGGTG TGATTCGAGA TGTCTTAATG 
GGAGAAGTTC CGTTAATCTT CCGTAAAGAA ATTTATGCCA CCGCTTCTTT TATTGGTATT 
AGTTTATTGC TGGTCTTAGT ACATTTAAAT CTTCCGGTGG ATTTGGCTGT CATTTTGTCC 
GTTACGGTTA TTTTTAGTTT ACGCATTTGG GCCATTTTAT TTAACATCGG ATTGCCCGTT 
TTTCAACCGA TCAATTCACA GGACTAA
 
Protein sequence
MNLVQTLYYL DLLGTVVFAM TGLLAASRKQ LDLFGAIVIA MVTAVGGGTL RDLILDQPVF 
WVEHNIYIYV VVFSTLFLFF YARIKEIPVK LLLYLDALGL AVFSVIGAQK AMALGLSDPI 
IIMTGVMTGV VGGVIRDVLM GEVPLIFRKE IYATASFIGI SLLLVLVHLN LPVDLAVILS 
VTVIFSLRIW AILFNIGLPV FQPINSQD