| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1168 |
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| Symbol | |
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| ID | 3760655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1270475 |
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| End bp | 1273954 |
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| Gene Length | 3480 bp |
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| Protein Length | 1159 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637785892 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_391437 |
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| Protein GI | 78485512 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.507558 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAAAA ATCATTCGCC TTATGCCTTA TTAGAAGCTG ACCAAATTTC TCTCAAAGGT
CAAACTTCGA CTTGGTCTTT AAATAATATT TCTGAAAGCG CTCTCGCCTT GATTGAAAAG
GCGCAAAATG CACCAGGCCT GGCGGTTTTA TTGACTGAAA ATATGGCCGA AGCCAATAAA
TACAGTGAAT TGTTACGCTT TTTTGCCGAG ACAGATTACC CTATTCTAAG CTTTCCTGAA
TGGGAAACCT TACCTTATGA CCAGTTTTCG CCTCATCAAG ATATTATTTC ACAACGTCTG
AAAACCTTAT ATCAGCTGCC CAGCACCAAA CAAGGGTTGC TGATTCTGCC TGTCAGCACC
TTGATACAAA AAGTGGTTCC CCACCAATTT ATTGAAAAAT ACACTTTTTT ATTACAGTGT
GGTGAAACGG TTGATATCGA CGCTTTTACT CGCCAGCTGG AATCCAGTGG CTACCAGCGC
GTCAGTCAGG TTATGGAGCA TGGTGAATTT GCAGTCCGCG GTTCCATTAT CGATTTATAC
CCGATGGGCA GTCGAACACC CTATCGGTTA GACTTGTTTG ATGATGAGAT CGAAACCATC
CGAAGTTTTG ATCCCGAAAC ACAACGCAGT GTTGATTCGA TTGAGCAAAT CGAATTATTA
CCCGCTAAAG AATATGATTT GACGCCTGAA GGGATCAGTC TTTTTCGTCA AAACTTCCGC
AGCCACTTTG GAGATGATGC TCGCAATAGC CAGCTTTATC GTTCCGTTAA GGATGGACAG
ACCGTTGATG GTTTAGAATA TTATCTATCT TTGTTTCACT CCAATATTGC CACTTTCTTT
GACTATCTGC CGTCTGATTG CCTTTTCTTT AACCAAGGCG ACCTTCAGGC ACAGATTCGA
CAAAACTGGC AGGACTATCA AGAACGTTAC GACATTGCGC AACATAATCC TGATTACCCG
GTGTTAGTAC CTTCAGAACT GATTTTATCT GAAAATGAAA CCTTCTCTGC CTTAAAGGCC
TTTCACCGTA TACAGTTTTC TCTGCAACCA ACGGACAAAG CGACCGCAAC GTTTAAAACG
TATCCCTTAC CGGACTTAAC GATTCAGTCA AACAGTGAAT ACCCGTTGGC AAAGTTGAAT
GCGTTTCTAG ATCAATACGC ATCGGAACAT AACGGCCGTA TCCTTTATTG TGCTGAGTCC
ACTGGTCGGC GTGAAACGTT ATTAACGATT TTATCCAAAC ACCCTCAGTT CAAAGGTAAA
TTACCCAAGC AAATCGACAG CTGGGGTGAA TTTAAAACGT CAAAAGCACC CTACGAAATC
ATTGTCGGCC CTCTGGAAGA TTCGGTTTAT ACCGATGATT TCTGCATTCT CTCGGAATCC
CAAATTTTCG GACAAACGGT CATTCAAAAA CGCCGTCGTA AGCGTAAACA TTCTGAGTTT
GACAACGCAA TTTCAAACTT AATTGAACTG GATTTAGGGC AACCTATCGT CCACTTTGAC
CATGGGGTCG GTCGTTTTCT AGGGTTAGAG ACGATGACTA TACAAGGCGA AGAACATGAG
TTTCTCATGA TTCAATATGC AGGAGACGCA AAGCTCTATG TGCCAGTCAC CTCTTTACAC
CTGATAAGCC GCTACACCGG TGCCAGCGCA GAAACCGCTC CCTTGCACAA GCTCGGTTCC
GATAAATGGG ATAAAGCCAA ACGTAAGGCT GCTGAAAAAG TTCGCGATGT TGCAGCCGAA
CTGCTCGACA TTTATGCCCA GCGTGAAGCT CGCCCCGGCT ATGCGTTTCA AACAGACGAA
GAAGCGTATG CTCGTTTTCG TGCAGGTTTT CCTTTTGAAG AAACGCCGGA TCAGGAAGCG
GCCATTGAAG CCGTGCTGTC TGATATGAAA TCGGACAAAC CAATGGACCG CCTCATTTGC
GGAGATGTTG GGTTTGGTAA AACAGAAGTT GCGATGCGAG CCGCTTTTGT AGCGGCTTAT
TCTGGTAAGC AAGTTGCTGT TTTGGTGCCC ACCACCCTGT TGTCACAACA ACATCTGGAA
AACTTTAAAA ACCGGTTTGC TGATTGGCCG ATTCGAATCG AAGGGTTGTC ACGCTTTCAA
AGTGCAAAAG AAACCAAGCA GATTGTCGAA GCGGTGAAAA ACAATCAAGT CGATATCATT
ATCGGCACCC ATAAAATCAT TCAGAACGAC ATGCAATTCG GTAATCTGGG GCTTATCATC
ATTGACGAAG AACATCGTTT TGGGGTGCGT CAGAAAGAAC AGCTTAAAAA ACTTCGTACC
GAAGTGGATG TGATGACCAT GACGGCCACT CCTATTCCCC GAACCTTGAA TATGGCAATG
AACGATTTAC GTGACTTGTC CATTATCGCG ACTGCGCCGG CTAAACGTTT GGCCGTGCAA
ACCTTTGTGC AAGATTGGAA CCCGGATGTT GTCAAAGAAG CTTGCCTTCG AGAAATTCGT
CGTGGTGGAC AAATTTACCT GCTCTTTAAT AACGTCGACA AAATTGAACA GATGGCCGAA
GAGATACAAG CATTGCTGCC TGAAGCCAAG GTTGAAACGG CACATGGTCA AATGCATGAA
CGAGAGTTGG AACAAGTCAT GCAGAACTTC TACCATCGTC GATTTAATAT TCTGGTGTGT
ACCACGATTA TCGAAACAGG CATCGACATT CCAACAGCAA ACACCATTTT AATTCATCGA
GCCGACAAAT TCGGATTAGC GCAATTGCAT CAGTTGCGCG GTCGCGTTGG GCGCTCTCAT
CATAAAGCGT ATGCTTACCT CTTTACCGCT GGCAAAGCAC TGATGACCAA AGATGCGGAA
AAACGATTAA CCGCAATTGC AAAACATGAC ACCTTGGGCG CAGGCTTCAT GCTGGCGAGT
CATGATTTAG AAATTCGTGG GGCCGGAGAG CTGCTTGGGG ATGGTCAATC AGGCCAAATT
CATGAAATTG GCTTTGGGCT TTATTCAGAT TTACTGGATC GTGCTGTTCG AGCTTTGAAA
TCAGGCAAGC AACCTGAGTT AGATGCTAAA TTGCATACCG GTGCCGAAGT TGAGCTAGGC
ATGCCGGCCC TTATCCCGGA AGATTATTTA CCGGATATCC ATACTCGACT GGTTTTCTAT
AAACGTATCG CCAGTGCTGA AGATAATAAT GCCTTGCAAG AACTGGAAGT GGAAATGATT
GACCGTTTTG GGTTATTGCC GGATCAGGTT AAAAACCTGT TTGAAACAAC CCGTGTGAAA
TTGGTTATTG ACGCATTAAA TCTGAAAAAA GTGGAAGCCA GCGAAGCAAT GATTCGCATC
CAATTTGGTT CCAACCCTAA CATCAACCCA CTGGAATTGA TTAAATTGAT TCAAAATCAT
CCTAAGAACT ATCAGTTAAA AGGGCAAATT GAATTAAAAT ATTTCGATAC AATGCTAGAG
ATGAAACAAC GAATTCAAGC TATCGAATTA ATCGTAGCCA CTATTTCAAA TAAGGAATAA
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| Protein sequence | MSKNHSPYAL LEADQISLKG QTSTWSLNNI SESALALIEK AQNAPGLAVL LTENMAEANK
YSELLRFFAE TDYPILSFPE WETLPYDQFS PHQDIISQRL KTLYQLPSTK QGLLILPVST
LIQKVVPHQF IEKYTFLLQC GETVDIDAFT RQLESSGYQR VSQVMEHGEF AVRGSIIDLY
PMGSRTPYRL DLFDDEIETI RSFDPETQRS VDSIEQIELL PAKEYDLTPE GISLFRQNFR
SHFGDDARNS QLYRSVKDGQ TVDGLEYYLS LFHSNIATFF DYLPSDCLFF NQGDLQAQIR
QNWQDYQERY DIAQHNPDYP VLVPSELILS ENETFSALKA FHRIQFSLQP TDKATATFKT
YPLPDLTIQS NSEYPLAKLN AFLDQYASEH NGRILYCAES TGRRETLLTI LSKHPQFKGK
LPKQIDSWGE FKTSKAPYEI IVGPLEDSVY TDDFCILSES QIFGQTVIQK RRRKRKHSEF
DNAISNLIEL DLGQPIVHFD HGVGRFLGLE TMTIQGEEHE FLMIQYAGDA KLYVPVTSLH
LISRYTGASA ETAPLHKLGS DKWDKAKRKA AEKVRDVAAE LLDIYAQREA RPGYAFQTDE
EAYARFRAGF PFEETPDQEA AIEAVLSDMK SDKPMDRLIC GDVGFGKTEV AMRAAFVAAY
SGKQVAVLVP TTLLSQQHLE NFKNRFADWP IRIEGLSRFQ SAKETKQIVE AVKNNQVDII
IGTHKIIQND MQFGNLGLII IDEEHRFGVR QKEQLKKLRT EVDVMTMTAT PIPRTLNMAM
NDLRDLSIIA TAPAKRLAVQ TFVQDWNPDV VKEACLREIR RGGQIYLLFN NVDKIEQMAE
EIQALLPEAK VETAHGQMHE RELEQVMQNF YHRRFNILVC TTIIETGIDI PTANTILIHR
ADKFGLAQLH QLRGRVGRSH HKAYAYLFTA GKALMTKDAE KRLTAIAKHD TLGAGFMLAS
HDLEIRGAGE LLGDGQSGQI HEIGFGLYSD LLDRAVRALK SGKQPELDAK LHTGAEVELG
MPALIPEDYL PDIHTRLVFY KRIASAEDNN ALQELEVEMI DRFGLLPDQV KNLFETTRVK
LVIDALNLKK VEASEAMIRI QFGSNPNINP LELIKLIQNH PKNYQLKGQI ELKYFDTMLE
MKQRIQAIEL IVATISNKE
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