| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1150 |
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| Symbol | |
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| ID | 3760637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1246834 |
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| End bp | 1251234 |
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| Gene Length | 4401 bp |
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| Protein Length | 1466 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637785874 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_391419 |
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| Protein GI | 78485494 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.765492 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCAAA AGAAAAGTAA GTTAAAACAT TATCTTAAGT CTTACCGTAT TTGGCTAATG
TTTTTATTAC TCTTCTTAAT GGTTCCTTTA TTCGCAATAA CCGTTATTGC AAATCATGGG
CCTAAAATGC AGCAGCAGAC CTTTAATAAC TTATTGAGTG TCGCTGAACT GAAATCTTAC
CAGATCACTA ATTGGCTTCA GGAACAAGAT AAGGTTGCGG AAGTCATTTC CAATAATAAG
CTGCTATTGC AATATACGCA GAATATACTG CTTACTAAAC AGGTGGCCGA ACAAAAGAAA
AACATTGTCG AGCTGTTTAA CACTTTACAA GAGTTTTATC ATTATGAGTC CATTTCACTA
ATCAAGCCAA ACGCCTCGCT CCTTTTAAAA ATGGGGGATT CTCATGATTT GTCAAACCCT
AAAACATTAA AGATTATTCA TAAAAGTATT CGAACCAAAT CTACTGTCAA AAGCGATATG
ACGTTTGATT CAGGTACCAC ATCTCACCTT GATATAGTCG TTCCTTTATT TAAGCCTTCA
GCCAAAAAAG ACACCGTGAT GGCACTGGTT TTATTACATC TTGACCCAAA CCGTTTTATC
TTCCCATATT TAAAGCGTTG GCCAACGTCC AGTCAATCGA GTGAAACCTT ATTGGTTTTA
CAAAATGGAA ACCGAGTTCA GTTTTTGTCG CCTCTCCGCC ATGCGGTGAA TGCTAACCAT
GAAGGTTTTA TTGAACGATC AATGAATGAA GACAGTTTAC CGGCCGTTGT GGCTCTAAAG
AGTCGTCAAT CAGGTTTTAT TGAAGGCATC GATTATCGGG GGGTTAATGT TTTAGCGGCT
TATTACCCCG TAAAAAATAC AGATTGGATG ATTATTTCAA AAGTAGATTT AGACGAGTCA
ACAAAGTCTC TTAACGATCT GGTTTTCTGG ATTGTTTTAG TCTCTTTCTC TGCTTTGTTT
TTGATTGGCA TTGCGTTTTT GATTGTGTTG AAAAAAGAAC GCGACTTGCA GGTGTTAGAA
CGATATGCAG AAAAAACGGA AGCCGAAAAA GTCCTGCAAA AATTTTATGA ACTGCCATTT
ATTGGTATGG CGATTTTGGA TGCTCAACAT GATAAATGGA TCCGCTTCAA TGATCGGTTA
CCCAAGATAT TAAGATATTC ATCACAAGAT TTAGCTCAAA AATCCTTTAA CGAAATTATT
CACCCTAAAG ACTTGGCTGA AGTTAATGCT CAATTAACGG ATATTGAATC AGGTAAAAGC
GAAGGCTTTA CAACAGAATT ACATTTATTA GCATCCGATG ACAGCATTGT TTTTGGAACG
ATTAATGTTA AATGTGTACG CGGTGAAAAT GGTAGGGTGC AGTACTATCT AATGACTGTT
CAAGATGTCA CGGAATTGAA GCATCTCGCA GAGCTTAATA TTGAACATCA GAACCAATTA
AATGCACTAG TGCATACAAT TCCAGATTTG GTTTGGTTAA AAGATACTGA AGGACTGTAT
TTAGCTTGTA ACCCGAGTTT TGAAAGGTTT TTTGGCGCAA AAGAAGCGGA CATTATTGGT
AAAACAGATT ATGATTTTGT TGATAAAGCC TTAGCGGATT TCTTTAGAGA GAATGATTGC
AACGCAATGG CTGCCGAAGA ATCTATTGAA AATGAGGAAT GGTTAACCTT TTCAGAAAAT
GGGTATCGCG GATTATTCTC GACCATAAAA ACTCCCATGA AAAATGAAGA AGGGCAAGTG
ATCGGTGTTG TTGGGGTGGC TAGAGATATC AGTAAGCGTA AAGAGGATGA AGCTCAGCTA
GAGCGCTTGA CCAAGCTTTA TTCAGCTATG AATCACACCA ATGAAGCCAT TATTCGTAGC
ACCGACCAAC TCACATTATT TTCAAAAGTC TGCGAGATCG CGGTTCGTGA AGGCGGAATG
AAAATGGCTT GGATTGGTAC GATCGATAAA GAGACAAACC TTGTTCACCC TGTTGTTCGT
TTCGGTAAAA ATTCTGAATA CCTGGATGGT TTAGAGATAT CAATCGATGA AACCGCGGAA
ACAGGGCAAG GCCCAACAGC GTTAGCAATC CGTCAAGATC AGCCCTATTG GTGTCAGGAT
TTTCAGGCAG ATTCACATAC ACAACCCTGG CACGAGCGTG CAAAACGATT TGGTTGGCAA
TCTTCGGCTT CAGTACCGTT ACATCAAAAT TCGGAAGTGA TCGGAACCCT TAATTTATAC
AGTGATAGGA AAGAGGCATT CGATGAACCT ATCCAACATT TATTGTTGGA AATGGCGATA
GATATCGGCT TTGCATTGAA CGATTTTTAT CATGCCAAAG AACGTAAAAT AATTGAAGCT
TCTCGCCAGG AAGCATTAGA TCGATTGCAA AAAATAGCGG ATCGATTACC CGGCGTGATT
TATCAATTCC GTTTAATGCC AGATGGAACA AGCTCCTTTC CTTTTGCGAG TGATGCTTTG
TATGAAATTT ATCGCGTAAA ACCGGAAGAC GTTACCGAAG ATAGCAGTAA AGTTTTTGAA
GTCATTCACC CGGAAGACGT GGATGATGTG CAAAAATCCA TTGAAGAATC GGCTGAACAC
TTAACACCAT GGTATCAAGA ATATAGGGTG CGTTTTAAGA ATGATGATGT TCGGTGGTTG
TCAGGGAATG CCATGCCCGA GAAGCAACCA GATGGGTCTA TCTTGTGGCA TGGTTTTATC
ACGGATATCA GTCAGCATAA AAAAACCGAA GCTCAAATCG AATTAGCCTC AAAAGTATTT
GAACAAAGTC GTGAAGGAAT CATGATTACA GACTCAAATC AAAAGATCCT AATGGTAAAT
GAAGCCTTTT CAGAAATCAG TGGTTACAGC GTTGAAGAAA CACTAGGAAA AACCCCAAGA
ATGCTAGCTT CCGGTCGACA TTCTAGAGAG TTTTATCAGA ATGTTTGGAA GTCGATTAAG
GAAAAAGGGC ATTGGCAAGG TGAGATTTGG AATCGTCGAA AAAACGGGGA GATTTTTCCA
GAATGGCTAT CAATCAGTCG TGGGTTAGAT ACGTCAGGTA ATGTCACGGA ATATGTTGGT
ATTTTTAATG ATATCTCCAA AGTAAAAGAA TCCGAAGAAA AAATAAAACA CCTTGCTCAC
TATGATCCTT TGACAGGTTT GGTCAACAGA GAGCTGCTAA TGGATCGACT TAATCACAGC
ATCAGCACGG CTGACAGAAA TAATACTCCA TTGGCACTCT TGTTTATTGA CTTGGATCAC
TTTAAAAATG TGAATGATAC ATTAGGTCAT CAGGTTGGAG ACCAATTACT GATTGAGGTA
GGGCAGCGCA TATTAAAAAT TTTACGAGAT GAGGATACAA TTGCACGCCA AGGTGGAGAT
GAGTTCATCG TTGTGTTGCC TGACACAGGA GAAAATGGTG CCGTACACGT GGCTGAAAAA
ATACTGGAGT CGATTTCTGA TCAGCTTAAT TTGAAGCCCT ATAAGCTCTT TATCACCCCT
TCAATCGGAA TTGCGGTTTA CCCTCAAGAT GGAAAAGATG CCGATAGTCT TTTAAAGAAT
GCCGACACCG CCATGTATCA AGCAAAAAAT GATGGGCGCA ATGTTTATCG ATTCTTTACG
ATGGAGATGC AAGCGCATTC GTCACGAATC ATGCAGATTG AAAGCGCTTT ACGTGTTGCC
TTATTTGATC AACAATTTGA ATTGTATTAC CAGCCGCAAA CCTGTGCTAA GTCTGGCAGC
ATTATCGGTG TTGAAGCCTT AATTCGCTGG AACCACCCTG AAATGGGACC AGTTTCGCCA
CAAGAATTCA TTCCTGTGGC CGAGCAAAGT GGGCAAATTT TAGCGATCGG ATGGTGGGTA
CTCCGAACAG CAATAAGACA AATCAAAATA TGGTCTGAAC ATGGTAAACC TTGTATTAAA
GTGGCTGTTA ACTTGTCTGC GGTTCAGTTT CGTTATGAGG ATCTCCCCAA ACAGGTTATG
AAAATTTTGG AAGAAGAAGG CGTTTCTCCT GAATTTTTGG AATTAGAATT AACAGAAAGT
GTCGCGATGG CTAATCCAGA AGCGGTGATT GAAATGATGG ATAAATTGGT TGGACACGGG
ATTAAAATGT CCATTGATGA TTTTGGAACG GGGTATTCCT CTTTAAGTTA CCTGAAACGT
TTTAAAGTAT CGAAATTGAA AATAGACCAG TCTTTCATCC GTGATCTCGC GGTCGACTCA
GATGATCGAT CGATTATCGA AGCCATTATA AGTTTATCGA AAGCTTTGGG TTTAAAGACC
ATTGCAGAGG GCGTTGAAAC CCAGGCACAG TTAGATTTTC TACAAGAAAA GCAATGTGAT
GAGATTCAAG GGTTTTACTA TAGCAAAGCA TTAACCCCTG AAGCGTTTGA TGCTTTTTAT
GAAAAACAAT CGCAAAAATA A
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| Protein sequence | MIQKKSKLKH YLKSYRIWLM FLLLFLMVPL FAITVIANHG PKMQQQTFNN LLSVAELKSY
QITNWLQEQD KVAEVISNNK LLLQYTQNIL LTKQVAEQKK NIVELFNTLQ EFYHYESISL
IKPNASLLLK MGDSHDLSNP KTLKIIHKSI RTKSTVKSDM TFDSGTTSHL DIVVPLFKPS
AKKDTVMALV LLHLDPNRFI FPYLKRWPTS SQSSETLLVL QNGNRVQFLS PLRHAVNANH
EGFIERSMNE DSLPAVVALK SRQSGFIEGI DYRGVNVLAA YYPVKNTDWM IISKVDLDES
TKSLNDLVFW IVLVSFSALF LIGIAFLIVL KKERDLQVLE RYAEKTEAEK VLQKFYELPF
IGMAILDAQH DKWIRFNDRL PKILRYSSQD LAQKSFNEII HPKDLAEVNA QLTDIESGKS
EGFTTELHLL ASDDSIVFGT INVKCVRGEN GRVQYYLMTV QDVTELKHLA ELNIEHQNQL
NALVHTIPDL VWLKDTEGLY LACNPSFERF FGAKEADIIG KTDYDFVDKA LADFFRENDC
NAMAAEESIE NEEWLTFSEN GYRGLFSTIK TPMKNEEGQV IGVVGVARDI SKRKEDEAQL
ERLTKLYSAM NHTNEAIIRS TDQLTLFSKV CEIAVREGGM KMAWIGTIDK ETNLVHPVVR
FGKNSEYLDG LEISIDETAE TGQGPTALAI RQDQPYWCQD FQADSHTQPW HERAKRFGWQ
SSASVPLHQN SEVIGTLNLY SDRKEAFDEP IQHLLLEMAI DIGFALNDFY HAKERKIIEA
SRQEALDRLQ KIADRLPGVI YQFRLMPDGT SSFPFASDAL YEIYRVKPED VTEDSSKVFE
VIHPEDVDDV QKSIEESAEH LTPWYQEYRV RFKNDDVRWL SGNAMPEKQP DGSILWHGFI
TDISQHKKTE AQIELASKVF EQSREGIMIT DSNQKILMVN EAFSEISGYS VEETLGKTPR
MLASGRHSRE FYQNVWKSIK EKGHWQGEIW NRRKNGEIFP EWLSISRGLD TSGNVTEYVG
IFNDISKVKE SEEKIKHLAH YDPLTGLVNR ELLMDRLNHS ISTADRNNTP LALLFIDLDH
FKNVNDTLGH QVGDQLLIEV GQRILKILRD EDTIARQGGD EFIVVLPDTG ENGAVHVAEK
ILESISDQLN LKPYKLFITP SIGIAVYPQD GKDADSLLKN ADTAMYQAKN DGRNVYRFFT
MEMQAHSSRI MQIESALRVA LFDQQFELYY QPQTCAKSGS IIGVEALIRW NHPEMGPVSP
QEFIPVAEQS GQILAIGWWV LRTAIRQIKI WSEHGKPCIK VAVNLSAVQF RYEDLPKQVM
KILEEEGVSP EFLELELTES VAMANPEAVI EMMDKLVGHG IKMSIDDFGT GYSSLSYLKR
FKVSKLKIDQ SFIRDLAVDS DDRSIIEAII SLSKALGLKT IAEGVETQAQ LDFLQEKQCD
EIQGFYYSKA LTPEAFDAFY EKQSQK
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