| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1089 |
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| Symbol | |
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| ID | 3760591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1170699 |
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| End bp | 1172702 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637785810 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_391358 |
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| Protein GI | 78485433 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.973751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGGT TGGTTGTCGG CCTGTTTAGT TTCGGTTTGA GCTATTTTGA ACAAAAAGAA
GTTCTTAAAG AAACTCGGCT TCAGGAAATG CAGCAACGAC TGGTTGAGCT GCAGGGAACG
ATTAATGACT TTAATCGTCG AGAGAACCAT CGCGCCATCA CGCGGGAAGT TTCTAGGCTA
ACATCGAATA AGAATTTACA GCTTATTTTA ATTGTCGGTG CGGATGGTTT CATTTATCAC
GCCTCTCGTC CCGCACTGAG AAATGCTTCG CTTTCATCCC AGCCAAATGT TTTGAATACG
TTGCAAGAAT TAGATTCTGC TCAGCCAGGT AAAGTGTGGT TAACTTCTGA TGATTCAGCC
GTTATCGGCG CCTTTCCCAT TGAACCGTTA CCATTGAAGA AAGTGTCCCA AGTGTTGAAC
AGTGCTTATT TATATGCTGA GTTTGATTTA TCGCATGACA TTGAATTACT TCAATATCGA
CACCAGCAAG AACTGTTTTA TACCTGGGGC GTTTTATTGA TTATTTTAAG CATCGGGTTT
TCTGCTTTAT ATTTTGACTT TAAACAAAAA ATACGACAGA TTCTAACCGG AACTAAGAAG
CTAACGCATG GTCAGTATGA TTATCGAATC AATCTGAAAG AAAAAAATGA GTTCGGTTTG
ATTGCAAAGT CCATTGACCG AATGGCCGCT TCGCTGGAAA GTAAAACCAA ACAATTGACG
GTGTTGGCAG AACAGGATTC CTTGACAGGA CTGACCAATC GTTACAAATT TTACCGGTTG
CTTGAAAAAC GTATTCATGC CTATCCGGAT AAGATGTTTG CGTTATTGTT CATCGATTTA
GACCGTTTTA AAATCATTAA CGATACATTA GGGCATCAGA CAGGGGACGA GTACCTCAAA
GTGATTGGAC AGCGTCTGTT GAAAAATACC TCTTCTCAAG ACATTGTCTC TCGATTTGGT
GGCGATGAGT TTGTTTTGTG TTTAGAGTCA GCCTCTTCAA AAACTCAGAT TCAGACACAA
ACAGAAAGCT TGTTAAAGGA TTTGTCGAAG CAAGTAGAAG TTAACGGGCA GAACCTGTTT
ACGTCTGCCA GTGTTGGTAT TTCTCTTTTC CCTCAAGATG GTCGAACGAT TCATGAACTT
ATAAAAGCGG CCGATATTGC AATGTATCAA GTGAAATCTC AAGATGCCGT AGCCATAAGC
TTTTATCAAG AGTCATTCGA CCACAATACG CTCAACTATT TATCTTTTAG AACGTATATT
AAAAACTCAA TTGAAGCCGG AGAGGTGTAT CCGCTTTTTC AGCCACAGGT TGATGTTCGA
ACACAGCAAA TTGTGGGGTT TGAAGCGTTG GCCAGAATGA AAGATGAAAC AGGAAATTGG
ATCAGTCCAG CACAGTTCAT TCCTGTTATT GAAGAGAATG GTTGGATGGT TGAGTTCTCC
AGCGTGATGT ATCGGAATGC TTTGTCTGAA TTTCAGGAAT GGGTTCAAAA TCAGCAGCCA
GAGAGACTTC CTTCCTTATC ATTGAACTTA TCCATTATGC AAATCAACCA TAAAGATTTT
TTAAGTAATT TGGATCATTT ATTAACACAA TTTAAAGCCA TTTCAAGCTG TTTAGAGTTG
GAAATTACTG AAGGTATTTT TATCGGCAAT ATCGAATCGA AATTGCCGAT TTTAGCGGCG
ATTAAAGCCA GAGGAATTCA AATTGCCATT GATGATTTTG GAACTGGATA TTCGTCTTTA
AGTTATCTAA AAAAACTGCC TTTGGATCGA TTGAAGATTG ACCAATCTTT TGTTCGAGAT
ATTGATATTG ATTTAAATGA CAACGCGATT GTTGAAACGA TTATTGCAAT GGCGTCAAAA
CTTGGGTTGG AAGTCGTTTC TGAAGGGGTT GAAACCGAAC AGCAACTGAG CTTTTTAAAG
GCACACGATT GTCACATCAT TCAAGGGTTT TTAACCGGAC ACCCGGGGCC TTTGCCGTAT
TCTAAGCACT CAAAAGTCGC TTGA
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| Protein sequence | MTGLVVGLFS FGLSYFEQKE VLKETRLQEM QQRLVELQGT INDFNRRENH RAITREVSRL
TSNKNLQLIL IVGADGFIYH ASRPALRNAS LSSQPNVLNT LQELDSAQPG KVWLTSDDSA
VIGAFPIEPL PLKKVSQVLN SAYLYAEFDL SHDIELLQYR HQQELFYTWG VLLIILSIGF
SALYFDFKQK IRQILTGTKK LTHGQYDYRI NLKEKNEFGL IAKSIDRMAA SLESKTKQLT
VLAEQDSLTG LTNRYKFYRL LEKRIHAYPD KMFALLFIDL DRFKIINDTL GHQTGDEYLK
VIGQRLLKNT SSQDIVSRFG GDEFVLCLES ASSKTQIQTQ TESLLKDLSK QVEVNGQNLF
TSASVGISLF PQDGRTIHEL IKAADIAMYQ VKSQDAVAIS FYQESFDHNT LNYLSFRTYI
KNSIEAGEVY PLFQPQVDVR TQQIVGFEAL ARMKDETGNW ISPAQFIPVI EENGWMVEFS
SVMYRNALSE FQEWVQNQQP ERLPSLSLNL SIMQINHKDF LSNLDHLLTQ FKAISSCLEL
EITEGIFIGN IESKLPILAA IKARGIQIAI DDFGTGYSSL SYLKKLPLDR LKIDQSFVRD
IDIDLNDNAI VETIIAMASK LGLEVVSEGV ETEQQLSFLK AHDCHIIQGF LTGHPGPLPY
SKHSKVA
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