Gene Tcr_1085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1085 
Symbol 
ID3760587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand+ 
Start bp1166669 
End bp1167643 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content46% 
IMG OID637785806 
ProducttRNA delta(2)-isopentenylpyrophosphate transferase 
Protein accessionYP_391354 
Protein GI78485429 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase 
TIGRFAM ID[TIGR00174] tRNA isopentenyltransferase (miaA) 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.912595 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATCGA TGAATGTGGC GCAGCTCATT GAACAAAAAA TCTGTCTGGC GATCATGGGG 
CCAACGGCTT CTGGGAAAAG TGGATTGACC ATGGCGTTGG CCAAGCACCT TCCGATTGAA 
ATCATCAGCG TGGATTCGGC CTTGATTTAT CGTGGAATGG ATATTGGAAC CGCCAAACCA 
ACACTGGATG AACAGGTTGC TGTACCACAT CATTTAATCG ATATTCTGGA TCCGACAGAA 
AGTTATTCGG CTGCGGATTT TGTGGAAGAT GTCCATGAAC TGGTGAAAGA GATTTTTGCA 
AGAGGCAACT TACCGGTGCT GGCGGGTGGA ACCATGATGT ACTTTAATGC GTTGCAACAG 
GGCATGGCGA AGCTGCCTTC GGCGGATGAA GCAATACGTG CCAAAATTCA CCAGGCCTGG 
CAAGCGAACC CGGCGGCGGT TCATGCACAA CTGAAACAAG TGGATCCAGA GGCTGCTGAA 
CGCATTCATC AAAATGACCC TCAACGCTTA ATTCGCGCTT TAGAAGTCTA TGAAATGACG 
GGCAAACCGC TGACACAGTT GCAGCGAGAA GGTCAGCAAG AAGGGTTGAC TGAATTTAAA 
CTGGCGAAAG TGGCTTTGAT TCCTGAAGAC CGTAAAAAAC TGCATGAACA AATTGCGGTG 
CGGTTTCATG AAATGCTGAA TAACGGGTTT TTAAAAGAAG CGGAAAAGGT GTTTTCTTTA 
GACGGTTTAA GCGCCGATTT ACCTGCCATT CGCAGCGTCG GTTATCGCCA GGCCTGGCTG 
TTTTTTGCAC AAGAATATGA TTACGACACC TTTGTCGAAA AAAGCATTGT GGCCACTCGC 
CAGTTAGCCA AACGTCAGAT TACCTGGCTT AGAAAAGAAC AGGATTTACT GGTGCTGGAT 
CCCTTTAAAA CAAATGTTGA CGATAGGGTT GAAGCTGTTT TAGATTACTT GTCTGCGTTA 
ACGAAAAATG CTTAA
 
Protein sequence
MQSMNVAQLI EQKICLAIMG PTASGKSGLT MALAKHLPIE IISVDSALIY RGMDIGTAKP 
TLDEQVAVPH HLIDILDPTE SYSAADFVED VHELVKEIFA RGNLPVLAGG TMMYFNALQQ 
GMAKLPSADE AIRAKIHQAW QANPAAVHAQ LKQVDPEAAE RIHQNDPQRL IRALEVYEMT 
GKPLTQLQRE GQQEGLTEFK LAKVALIPED RKKLHEQIAV RFHEMLNNGF LKEAEKVFSL 
DGLSADLPAI RSVGYRQAWL FFAQEYDYDT FVEKSIVATR QLAKRQITWL RKEQDLLVLD 
PFKTNVDDRV EAVLDYLSAL TKNA