| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1062 |
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| Symbol | |
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| ID | 3761810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1135611 |
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| End bp | 1137311 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637785783 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_391331 |
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| Protein GI | 78485406 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0191664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACTTGT TCATGTTTAA AATTTTCAGT TTTCTGTTTC TTCTTATGGG AGTCGCGTTT
CAAGCAAATG CAGTGGCTCC AGTTGATATT TCACAGCCAC AATATCAAAT TGGTAAATCA
GTGCTTTTTT TGGAAGATGC CCGTCACACG CTTTCGTTTT CTGAAATAGA AAAAGTGCCT
GACTCTGAGT TTGAATCTGT TGATAAAAAC ATTTTTTCTT ATTTGTTTAC CCATTCGACT
TTCTATTATA AATTTCAAGT AAAGAATCCG CAGCCAAAGG CCGTAGAGCG TTTATTGGTG
TTTGAAACAG CTTGGCTTGA CTTTATTCAA GTTAAAGTCA TCTCGCCCGA CCAAAGCCAA
CAGAGGTCTT TGACAGGAAA TTTATTTCCT TTCAAGCAAC GAGCGGCAGA GCATCCTTAT
CCTAACGTTG AGCATCGGTT TGAACCTGGT ATCTCGACGG TGTATGTCCA AGTCAAAACG
CGTGACCCTT TTATCGTTCC GATCTCAATC CTAGATACGG AGTCGTTATT TAAAAATTAT
ACGTCTATCT TTGCGACGTC GATGTTTATC TACGGCATTA TTATCGCGAT GATTTTGTAT
CATTTCATTT TGTTCGCCAG TATTCAGTTG CGCTACTATG CCTACTATGT ACTGTATTTG
ACGTCATTTT TAGCCATGAA TGTTAGTTAC AATGGCTATA CCTTTCAGTT CTTATTGCAA
GACTTTCCGG TTATCCAAAA CTGGATTCAG GCGACAACCA TCTTTTTATT TGCGATCGCC
GGGTTATTAT TTGCTAAAGC CTTTCTCAAT CTAAAACGCT ACATCCCACT GGCGCATACT
CTCACCAAGG CTATGATTTG GGTATTTGTC AGCGTCATGG TGATTTCCGC TTTGTTCGGG
TATCACGAGC ATGTGATGTT CGCGATTGGA ATGTCGGTTC TTTTCAGCTT ATTTGTGTTT
ACCATTGCGT TATTAAGTTA TTTGAAGGGT AATAAAACAG CACGTTTTTT CTTGTTAGGA
ACCACGGCAG GGTTGATTGG TACTAGTGTG ACCGCCTTAA CGGTCATGGC GATTATTCCT
TACAGTCACC TTGGTTATCA AGCGGTGGAT TATGGCTTAG CCATTGATTC GATCTTGTTG
TCTTTTGCAT TGGTGGATCG GGTTAAAAGT ACTGAAAAAG ATAAACTCCA AGCAGAAGCC
TCAGCCAACA CCGATGCTTT AACGAATGTA GCGAATCGTC GTGCTTTTAA TCATTTTTGT
GAACACCTTG CTTTTGATTC TCAAAATTTT TATCAAGGTA AATTGGTTGC TTTGATGCTT
GATATTGACT TTTTTAAAGA AATTAACGAT TCCTTCGGTC ATTCGGTAGG GGATATCGTC
TTACAAAAAG TGGCGAGTCT TTTAAGAAAT AATACAAAAA GTGCTGACAA GATTTTCAGA
ATGGGAGGGG AAGAGTTTTT AGTCTTGTTG CTTGATACGG AACTCGAAGA TGCTCAAAAG
GTTGCCGAGA GAATCCGAGC AGCAATCGAA GAGATGGAAA CCCATAAAGA AAATAAAACC
ATTTCAATTA CAGTGAGTAT TGGTATGGCA GACTTTTTGC CTGAAGACGT GAGTTTGCTT
TCAACCATTC AGCTAGCGGA TAAAGCCCTT TATGAGGCCA AGCGTTCTGG TCGAAATAAG
GTTGTGTTGG CGGTTCGATA G
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| Protein sequence | MHLFMFKIFS FLFLLMGVAF QANAVAPVDI SQPQYQIGKS VLFLEDARHT LSFSEIEKVP
DSEFESVDKN IFSYLFTHST FYYKFQVKNP QPKAVERLLV FETAWLDFIQ VKVISPDQSQ
QRSLTGNLFP FKQRAAEHPY PNVEHRFEPG ISTVYVQVKT RDPFIVPISI LDTESLFKNY
TSIFATSMFI YGIIIAMILY HFILFASIQL RYYAYYVLYL TSFLAMNVSY NGYTFQFLLQ
DFPVIQNWIQ ATTIFLFAIA GLLFAKAFLN LKRYIPLAHT LTKAMIWVFV SVMVISALFG
YHEHVMFAIG MSVLFSLFVF TIALLSYLKG NKTARFFLLG TTAGLIGTSV TALTVMAIIP
YSHLGYQAVD YGLAIDSILL SFALVDRVKS TEKDKLQAEA SANTDALTNV ANRRAFNHFC
EHLAFDSQNF YQGKLVALML DIDFFKEIND SFGHSVGDIV LQKVASLLRN NTKSADKIFR
MGGEEFLVLL LDTELEDAQK VAERIRAAIE EMETHKENKT ISITVSIGMA DFLPEDVSLL
STIQLADKAL YEAKRSGRNK VVLAVR
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