Gene Tcr_1008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1008 
Symbol 
ID3760494 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand+ 
Start bp1087489 
End bp1088166 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content48% 
IMG OID637785729 
Producthypothetical protein 
Protein accessionYP_391277 
Protein GI78485352 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0000136186 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAAC TAAATAAACT CGCGACAGCG ATGATTCCTA ACAACGGCGG TGAGTTAGTT 
TTATTACAGC GTGAAGATGA ATTTTCGATA AAGCTTTCCG GTGCGCGGGG GGTCTTGATG 
AATAGCCGAG TTTATAACTC CGAGCAGGAG CTGGCTAAGC TTGGCTGTGC ACATATTAAA 
AACAAAGAGG GTGCAGAGGT TTTAGTGGGC GGTTTGGGAA TGGGGTATAC CTTGGCAACC 
GCGTTGGCCT GTGTGACGGC TAGTTCAAGG GTGACCGTGG CAGAGCTTAT TCCAGAAGTG 
GTTGAGTGGA ACCGCGGCCC GCTAGGGGAA TGTGCAGGCA ATCCGTTAGC AGATGAACGC 
AGTCATGTAC GAGTAGGCGA TATTGCGGAA TTAATCAAGC AACAGAAGCC AGATTTTGAC 
GCCATTTTGC TTGATGTCGA TAATGGTCCG GAAGGCATGA CGAACAGTGA TAACAATTGG 
CTTTATTCGA CCGAAGGCTT AAATGCCTTA TCCAATAGTT TACGCCCTGA AGGGATGTTG 
GCGGTGTGGT CTGCAGGGCC TGATTCGAAG TTCATTACGC AACTCAAAAA AGCCGGGTTT 
AAAGTGAGCG ATAAAATGGT AAGAGCGAGA CCCGGTAAAG GGAGTCGGCA TACTATTTTC 
CTGGCGAAAA AATCTTAA
 
Protein sequence
MKQLNKLATA MIPNNGGELV LLQREDEFSI KLSGARGVLM NSRVYNSEQE LAKLGCAHIK 
NKEGAEVLVG GLGMGYTLAT ALACVTASSR VTVAELIPEV VEWNRGPLGE CAGNPLADER 
SHVRVGDIAE LIKQQKPDFD AILLDVDNGP EGMTNSDNNW LYSTEGLNAL SNSLRPEGML 
AVWSAGPDSK FITQLKKAGF KVSDKMVRAR PGKGSRHTIF LAKKS