Gene Tcr_1000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1000 
Symbol 
ID3760486 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp1076977 
End bp1077474 
Gene Length498 bp 
Protein Length165 aa 
Translation table11 
GC content45% 
IMG OID637785721 
ProductNUDIX hydrolase 
Protein accessionYP_391269 
Protein GI78485344 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1051] ADP-ribose pyrophosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00000136038 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATTGATG CAGATGGGTA TCGCCCCAAT GTAGGTATCA TTATTGTCAA TAAGGAAGGT 
AAACTTTTTT GGGGAAAACG CCTGTACCAA GATGCTTGGC AGTTTCCCCA GGGGGGCGTA
CGTGAGAATG AAACGCCTCA ACAAGCTGTT TTTCGAGAGC TGAAAGAAGA AGTCGGGCTG
GAGCCTTCAG ATGTCAGAGT TTTGGGGCGC ACCAAAGACT GGCTGACGTA TGACCTACCA
AAACATTTGA TTCGACACTA TAGTCAGCCA GTCTGCATCG GTCAAAAGCA GATTTGGTTT
TTGCTGGGCA TGTTAAGTGA TGATGAAAAG ATTAATTTAA ATACACACGA AACTCCGGAG
TTTGAAGGGT GGAGCTGGGT AGATTACTGG GTGCCGGTTC AAAATGTGGT TGAATTTAAA
CAATCCGTCT ATCACCAAGC CTTAACCGAG CTTGAAACCC ATTTGCATAA ATTCTGGACC
AAAGAACACG TCGGATAA
 
Protein sequence
MIDADGYRPN VGIIIVNKEG KLFWGKRLYQ DAWQFPQGGV RENETPQQAV FRELKEEVGL 
EPSDVRVLGR TKDWLTYDLP KHLIRHYSQP VCIGQKQIWF LLGMLSDDEK INLNTHETPE
FEGWSWVDYW VPVQNVVEFK QSVYHQALTE LETHLHKFWT KEHVG