| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0999 |
|---|
| Symbol | |
|---|
| ID | 3762177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 1076024 |
|---|
| End bp | 1076680 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637785720 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_391268 |
|---|
| Protein GI | 78485343 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0230421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTAG CAATATTTGA TCTTGATAAC ACCTTAATCC ATGGCGACAG TGACTACCTT
TGGGGAAAGT TTCTGGTTGA AAAAGGCGTG GTCGATGCCG ACGTCTATGA AAAAGCCAAC
GAGCAGTTTT ACACCGATTA TAAAAACGGT TGCCTGGACA TCTATAAGTT CCAACGCTTC
TCTTTAGCGC CTCTGACGCA ACACAGCATG GACACGTTAA ACGCTTGGCA TGACGAGTTT
ATGCAAAAGT ACATTCGGCC TATTTATCAA GATAAAGCGC AGGCGTTGGT GGACGAACAT
CGCACCAAAG GCGATCAGCT CTTGATTGTG ACGGCAACCA ACAGTTTTGT GACCCGCCCG
ATTGGCCACT TGTATGGCAT TACGGAGCTT ATTGGCACCG AGCCGGAAAT TGTGGACAAC
AAGTTCACAG GTGACGTCGC CGGTGTGCCT TCGTTTCAGG AAGGCAAAGT CACGCGATTG
AATGATTGGC TGAAAGAGCA TAACCAGACT CTGGAAGGCA GTTATTTTTA TTCCGACTCA
CGCAACGATA TTCCCTTACT GGAAATTGTC GATCACCCGA TCATTGTCGA TGCCGATGAG
TATCTGACTC AAGTGGCGGA AGAACGCCAA TGGCCAAGTT TGTCTTTCAG AGATTGA
|
|---|
| Protein sequence | MALAIFDLDN TLIHGDSDYL WGKFLVEKGV VDADVYEKAN EQFYTDYKNG CLDIYKFQRF
SLAPLTQHSM DTLNAWHDEF MQKYIRPIYQ DKAQALVDEH RTKGDQLLIV TATNSFVTRP
IGHLYGITEL IGTEPEIVDN KFTGDVAGVP SFQEGKVTRL NDWLKEHNQT LEGSYFYSDS
RNDIPLLEIV DHPIIVDADE YLTQVAEERQ WPSLSFRD
|
|---|
| |