Gene Tcr_0946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0946 
Symbol 
ID3762043 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp1020542 
End bp1021933 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content49% 
IMG OID637785667 
Producthypothetical protein 
Protein accessionYP_391215 
Protein GI78485290 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1030] Membrane-bound serine protease (ClpP class) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0248108 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCACG TTGTAAAGCT CAATACATGG ATGGCATGGC TGATATGGCT GGGCGTTTTT 
TTGCAAAGCG CTCCAGCGTT CAGTGCGGAA ACAACTAAGA CGCTTCATAA CCAAGTTGTT
CAATTGACGG TTCAGGATGC GATTGGGCCG GCCACTGTGG ATTATATCGA ACGATCTTTA
GAGAAAACGG CGCAACAACG CGCGGAACTG GTGGTGATTC AATTGGATAC ACCGGGTGGA
CTCAGTTCAG CAATGCGAAG CATCATTCAA GCGATTGCCC GTTCTCCTGT TCCTGTGGCC
ACGTTTGTAG CGCCATCCGG TGCCCGTGCT GCCAGTGCAG GCACTTACAT TCTCTATGCC
AGCCACATCG CTGCAATGGC TCCTGGTACG AACCTTGGCG CGGCAACCCC TGTGCAGATG
GGGGGTATTT CCTTACCGAA TCCATCTGAA AATTCCCAAA AAACACCCAA CGAGCCGGCT
TCTGAAGAGG CGAGTAAGCG CAAAGTGATT AATGATGCGG TGGCTTATAT CCAAGGACTC
GCACAGTTGC ATAATCGTAA TGCGGACTGG GCCGAAAAAG CGGTTAGGGA AGCGGCCAGT
TTGCCGGCGA ACGAAGCATT GAAACTCAAT GTGATTGACG TGATTGCCGA TAACCTACGT
GATTTGCTGC AACAAGTTGA TGGTAAGCAA GTGACATTAA ACGGGCAGAC GATCAACTTA
AAAACAGCTG ATGCGAACAT TGTTCAGTTG GCACCGGATT GGCGCAGTGA ATTATTGAGC
GTGATTACCA ATCCCAATAT TGCGTATATC TTATTGTTGA TTGGGGTGTA CGGTTTGATT
TTTGAATTCC TCAACCCCGG CGGGATTGTG CCAGGCACCA TTGGTGCGAT TGCGCTGGTA
CTCGCTTTAT ATGCGTTTCA ACTCTTGCCG ATTAATTATG CGGGCATGGC GTTGATTCTT
TTAGGGGTTG GGTTAATGAT TGGTGAAGCC TTTGAACCGA GCTTTGGCAT TTTAGGCATC
GGGGGGACGG TTGCCTTTGT GTTCGGGTCT ATTATTTTGA TGGATACGGA TGCGCCAGGG
TTTGGCATCG ACCTTTCCGT CATTATCACG TTTGCCGTCA TCAGTGCGTT AATATTGATT
GCGGTTGTTC ATTTGGCTCT TAAGTCGTAT CGACAGCCCA TTGTCAGCGG TGTTCAGGAA
TTAGTGGGGG CAGAGGCTAG AGTGGTAGAG GATTTTGACC GTCAAGGGCA TGTCATCATT
CATGGCGAGC ATTGGCAAGC GATTAGCCAG ACCCCATTGA AACAAAATCA AATGGTTAAA
GTAACCGGGC TTAAAAACCT GACGTTAACG GTGGAACCGG TTGAGTCGAC AACAGAGGAG
AGATCAGTAT GA
 
Protein sequence
MNHVVKLNTW MAWLIWLGVF LQSAPAFSAE TTKTLHNQVV QLTVQDAIGP ATVDYIERSL 
EKTAQQRAEL VVIQLDTPGG LSSAMRSIIQ AIARSPVPVA TFVAPSGARA ASAGTYILYA
SHIAAMAPGT NLGAATPVQM GGISLPNPSE NSQKTPNEPA SEEASKRKVI NDAVAYIQGL
AQLHNRNADW AEKAVREAAS LPANEALKLN VIDVIADNLR DLLQQVDGKQ VTLNGQTINL
KTADANIVQL APDWRSELLS VITNPNIAYI LLLIGVYGLI FEFLNPGGIV PGTIGAIALV
LALYAFQLLP INYAGMALIL LGVGLMIGEA FEPSFGILGI GGTVAFVFGS IILMDTDAPG
FGIDLSVIIT FAVISALILI AVVHLALKSY RQPIVSGVQE LVGAEARVVE DFDRQGHVII
HGEHWQAISQ TPLKQNQMVK VTGLKNLTLT VEPVESTTEE RSV