| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0944 |
|---|
| Symbol | |
|---|
| ID | 3762041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 1018851 |
|---|
| End bp | 1019636 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637785665 |
|---|
| Product | pseudouridine synthase, Rsu |
|---|
| Protein accession | YP_391213 |
|---|
| Protein GI | 78485288 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000000200951 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGGC CTGCGTTAAA GCGGACGGAT GGCACTAAAA ACGGTAAAAT AAGCTCAATT
AAACAAAAGA TTATTGCGAC AGATTTCAGT AGCATGCGAC TCAATAAACT CATCAGCCAA
GCAGGACTCG GTTCTAAAAA ACAAGCGGAT GCCTGGATTA TGCAAAACCG AGTGACGGTT
AATGGCCAGG TCGCCAGTGT CGGACAGAAA GTCAATCAGC ATGACCAGGT TTTGCTGGAT
GGTCGCCCCG TTGCTTGGTC GTCAGAGGTG CTTTTAATGG CGTACCATAA ACCGGTTGGA
GTGGTTTGCA CTCATGATTT ATCGGTGGCT AATAATTTAG TGGTGTCGAC AGGACTCATG
CAGCACTTTT CTGCAATGGG ACGTTTAGAC AAAGCCTCAG AAGGCTTGAT GATTCTGACC
AATCAAGGGG ATTTGACGAA TCATATTTTA CAGCCAGGAT TTGCACATGA AAAAGAATAT
TGGGTTGAGG TCGATCAGCC ATTGACAGAA TATTTTTTAA CCAACATGCA GCAGGGGGTT
GAAATTATGG GGCAGGTAAC TCGGCCTTGT GAGATTGAAG CCACCGGAGA ACACTGTTTC
AGAATTGTGC TTACGCAAGG GTTGAACAAA CAAATTCGTC GAATGTGCAA ATCCTTGGGC
TATCGAGTGC TGCGTTTACA ACGCGTTCGT ATTGCCCAAG TCTGGTTGGA TGATTTGCCC
GTGAATACGC TCAGAGAGCT GAATGACGTT GAAAAGTCCG GTTTGCAACG ACTGATTCCT
CGCTAG
|
|---|
| Protein sequence | MTRPALKRTD GTKNGKISSI KQKIIATDFS SMRLNKLISQ AGLGSKKQAD AWIMQNRVTV
NGQVASVGQK VNQHDQVLLD GRPVAWSSEV LLMAYHKPVG VVCTHDLSVA NNLVVSTGLM
QHFSAMGRLD KASEGLMILT NQGDLTNHIL QPGFAHEKEY WVEVDQPLTE YFLTNMQQGV
EIMGQVTRPC EIEATGEHCF RIVLTQGLNK QIRRMCKSLG YRVLRLQRVR IAQVWLDDLP
VNTLRELNDV EKSGLQRLIP R
|
|---|
| |