Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_0925 |
Symbol | |
ID | 3761848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | - |
Start bp | 1002461 |
End bp | 1004101 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637785647 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_391195 |
Protein GI | 78485270 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTAAAC ACACTTTTTT TTCCTCTGTC TTCTCTCTAA CAATGATTGG TGCTTTGCTA TCAGGGTGCA GTCAGTTTCC GCTCCATAAC AAAAACCATG GATACACAAA CACTGATGAG GTTAATTTTT CTAAGCTTCC CGTGACGGAC CCTGTCATCG CAGATACTGA AGAGACCGAC GCTTTTGAAA AAACCATTCA AAACTCGACC AAGCGTTTCC TGGCATTAAA AACCAACGAC GATCTATCCA ATCAATTGGA TCAAGCGTTA ATCCTATTAA ATGATAAGCC AACGTATGAC GACTTATGGC AGGAACTCAG TGAACATTTA TTTTTAGCGC CGGCGAACAG TGAGCATTTT GAAGAATATC AAAACTATTA CGAGAATAAA AAAGCTTACT TGAAACGCGT TTCGGTACGA GCGAAACCTT ACCTTTACTT CATTTTAAAT GAAGTAAGTC GCCGACACAT GCCGTATGAA ATTGCTTTAT TGCCCGTGGT TGAAAGTGGC TATTACCCTT ACGCTCGCTC TTATGTCAAT GCCTCTGGTT TATGGCAGTT TATGCCGGCG ACAGGCTATA TGTTCGGCTT ACATCGTAAC TGGTGGTATG ATGGACGCCA GGATGTGTAT AAAAGCACAC TCGCGGCGCT CGACTACCTT CAAGCACTGT ATAAGCAGAA TGATTACGAC TGGCTATTGG CGCTTGCGTC CTACAACGGC GGGTATGGCA ACGTATTAAA AGCTCGGAAG CAATATTTAA GAAAACACCC AAACGGTGAA CCTTCCTTCT GGAATATTCG AGCTTATTTG CCGAAAGAAA CACAACATTA CGTTCCGCAA CTCCTTGCGA TATCAAACTT AATCATTCAT CGTGAAGATT ATGACATTGA CCTTGAACCC GTACCTAATG CGCCTTTTTT CAAGCGCGTG GAAATTTCGA ACCAGATCAG CCTGCCTAAA GTGGCGAAAT CCACTCAAAC GTCCCAGGCC ATTTTAAAAG TGCTTAACCC AGGGTATCTT AGACTGGCAA CGCCTCCTAC TGGCTCTCAT TCCGTCCTGC TGCCTATTGA AGTAGCGGAT GCCTTTGAAG TCGATTACCA GCAAAAACCT CATTTCTATG AGGTCAACTG GATGAGACAT AAAATTCGTT CAGGAGAAAG CTTAAGCGTC ATTGCGGCTA AATATAATAC GTCCAGTCGT GAAATTAAAA AACTGAACAA TATGAAAAAC AGTTTTTTGA GAGCCGGCAA AACACTTTTG ATTCCATTGC CACAAAGCCA ACAGCTGGCC CAAACCCCAT TAAAAAAATC AACGAACTAT AATGGTAAAA AACACATCCA CAAAGTTCAA TCCGGGGAAA GCCTATGGAC GATTGCGCGA TATTACAACA CCTCGCCGCG TAAACTGTGT GAGTGGAACC GGATCAGCAT TCGTGAACCT ATTCGAAAAG GCCAGAAGCT CGTTATCCAG TCAGATCGTT ACGGTCGAAA AGTCTCACAC ACCTTAAAAG AAGGTGAAAG CTTGTGGGTT GTGGCTAAAA AATATCGCGT CACTACGCAA GAATTATGTA ACTGGAATGG GATTAAAAAA TCGGCTGTTT TACACCCAGG CGTGAAAATA AAAGTATGGA TAAAAAGTTA G
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Protein sequence | MTKHTFFSSV FSLTMIGALL SGCSQFPLHN KNHGYTNTDE VNFSKLPVTD PVIADTEETD AFEKTIQNST KRFLALKTND DLSNQLDQAL ILLNDKPTYD DLWQELSEHL FLAPANSEHF EEYQNYYENK KAYLKRVSVR AKPYLYFILN EVSRRHMPYE IALLPVVESG YYPYARSYVN ASGLWQFMPA TGYMFGLHRN WWYDGRQDVY KSTLAALDYL QALYKQNDYD WLLALASYNG GYGNVLKARK QYLRKHPNGE PSFWNIRAYL PKETQHYVPQ LLAISNLIIH REDYDIDLEP VPNAPFFKRV EISNQISLPK VAKSTQTSQA ILKVLNPGYL RLATPPTGSH SVLLPIEVAD AFEVDYQQKP HFYEVNWMRH KIRSGESLSV IAAKYNTSSR EIKKLNNMKN SFLRAGKTLL IPLPQSQQLA QTPLKKSTNY NGKKHIHKVQ SGESLWTIAR YYNTSPRKLC EWNRISIREP IRKGQKLVIQ SDRYGRKVSH TLKEGESLWV VAKKYRVTTQ ELCNWNGIKK SAVLHPGVKI KVWIKS
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