Gene Tcr_0828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0828 
Symbol 
ID3762156 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp898746 
End bp900722 
Gene Length1977 bp 
Protein Length658 aa 
Translation table11 
GC content44% 
IMG OID637785547 
Productproton-translocating NADH-quinone oxidoreductase, chain L 
Protein accessionYP_391098 
Protein GI78485173 
COG category[C] Energy production and conversion
[P] Inorganic ion transport and metabolism 
COG ID[COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 
TIGRFAM ID[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
[TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTTAA AATTTTTATT AACCATTATC CTTTTATCAC CGCTATTTGG TGCGGTTGCA 
GCAGGGTTAT TTGGTCGTCA AATTGGACGA CGCGGGGCAC ACACGATCAC CATTTTCGGT
GTGGCTGTGT CTACGATTTT ATCGGCTTAT GTTTTCTGGC TTTTTGTTTT CAATGGTCAA
GCAGCCTATA ACGACTCGCT TTACACTTGG TTGGTTTCTG ACGGCATCCG TTTCGAAATC
GGTTACATGA TTGATGAGCT GTCGGCCACA ATGATGTTGG TGGTCACGTT TGTTTCATTG
ATGGTTCATA TCTACACCAT TGGCTATATG GATCATGATG AAGACTATGA ACACTCGAAT
CCTTATTATC AAAGATTCTT CAGTTACATT TCGTTGTTCA CTTTTTCAAT GCTGTCGCTT
GTTATGGCGA ACAACTTCTT ACAGCTTTTC TTTGGTTGGG AAGCCGTTGG GTTGGTGTCA
TATTTGTTGA TCGGTTTCTA TATGAAACGT GAGTCGGCCA TTCAAGCAAA TTTAAAAGCG
TTCTTAGTGA ACCGTGTAGG GGATTTCGGT TTCATTCTTG GGATCGCCGT TGTGGTGATG
TATTTTAATA CTTTGGATTA CAATGACTTC TTCGCAGGAT TGGAAGCACA TAAAGAAACG
ACAATCAGTT TCTTCCCGGG TGTTGAATGG TCAATGATCA CAGCATTGTG TTTATTGTTA
TTCGTTGGCG CCATGGGGAA ATCAGCGCAA ATGCCATTAC ACGTTTGGCT GCCAGAATCG
ATGGAAGGTC CAACACCTAT TTCGGCGTTA ATCCATGCGG CAACAATGGT TACTGCAGGG
ATCTTTATGG TTGCGCGTTT ATCACCGGCT TATGAAATGT CTGAAGTGGC TTTGAGCGCT
ATTTTAATCA TTGGTGCAAC AACGGCCTTC ATGATGGGTG CACTTGGGAT TGTTCAGAAC
GATATTAAAC GAGTGGTGGC TTACTCAACC TTGTCACAGC TTGGTTATAT GGTTGCGGCA
CTCGGGGCTT CAGCTTATGC GGCTGGGATG TTCCATGTAT TAACGCATGC ATTCTTTAAA
GCCTTATTGT TCTTAGCGGC TGGGTCAGTC ATTATCGCCA TGCACCATAT TCAAGATATT
CGTCAAATGG GTGGCTTGCG TAAGCATATG CCCGTGACCT ACATTGCCTT GTTGGTTGGA
ACACTAGCGT TGATCGGGTT CCCAGGTTTC TCTGGTTTCT TCTCAAAAGA CAGTGTCTTA
ATGGCCGTGG GTCAAACCGA TGTGTTTGGC GCGGGCTATG CACAAATCCT GTTGTTAATC
GGGGTGTTTG TCACCGCTTT CTACAGCTTT AGAATGTTCT TCCTGGTCTT CCACGGGCAA
GAGTCGGATT ATGTGAAAAA CCATAAGATT TCAGAATCAC CACTGGTGGT CACAGTACCA
CTGATCTTAC TGGCGATTCC AGCTGTCATT ATGGGCTTAC CGATGATGGA TGGCATTTTT
TCGGGCAGTT ATTTCGGTAG TTCTATCACC GTGTTGCCAG AAAATGACGT TCTAAAAACA
ATCTATACTG AGCAGTACCA TGGTGTGGTC GACATGATCG TTCACTCTTT GACAACAGCA
CCGGTTATTT TAGCCTTCTC AGGTGTTTTC TTAGCATGGT TGCTGTATAT TAAGCGCCCA
GAATTGCCTG GCAAAATCAA ACAAGCTTGT CCGCGTGGGT TCTATATGCT GGACAACGCT
TACGGTTTTG ACCGTTTCAA TGAAATTGTG TTTGAAAAGG GCGCTCGTAA GTTAGGGAAC
TATTTCTGGA AATCGGTTGA TGTGAAGTTG ATCGATACCG GAATTGTAAC CAACGGATTT
ACATCCATTG CAAACGCGGC CTCTGCATTG AGACTGAGTC AGACTGGTTT CTTATACCAC
TATGCGTTTG TAATGATCTT TGGCCTGCTA GCGATGCTAG TTTGGGTACT GTGGTAA
 
Protein sequence
MILKFLLTII LLSPLFGAVA AGLFGRQIGR RGAHTITIFG VAVSTILSAY VFWLFVFNGQ 
AAYNDSLYTW LVSDGIRFEI GYMIDELSAT MMLVVTFVSL MVHIYTIGYM DHDEDYEHSN
PYYQRFFSYI SLFTFSMLSL VMANNFLQLF FGWEAVGLVS YLLIGFYMKR ESAIQANLKA
FLVNRVGDFG FILGIAVVVM YFNTLDYNDF FAGLEAHKET TISFFPGVEW SMITALCLLL
FVGAMGKSAQ MPLHVWLPES MEGPTPISAL IHAATMVTAG IFMVARLSPA YEMSEVALSA
ILIIGATTAF MMGALGIVQN DIKRVVAYST LSQLGYMVAA LGASAYAAGM FHVLTHAFFK
ALLFLAAGSV IIAMHHIQDI RQMGGLRKHM PVTYIALLVG TLALIGFPGF SGFFSKDSVL
MAVGQTDVFG AGYAQILLLI GVFVTAFYSF RMFFLVFHGQ ESDYVKNHKI SESPLVVTVP
LILLAIPAVI MGLPMMDGIF SGSYFGSSIT VLPENDVLKT IYTEQYHGVV DMIVHSLTTA
PVILAFSGVF LAWLLYIKRP ELPGKIKQAC PRGFYMLDNA YGFDRFNEIV FEKGARKLGN
YFWKSVDVKL IDTGIVTNGF TSIANAASAL RLSQTGFLYH YAFVMIFGLL AMLVWVLW