Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_0801 |
Symbol | |
ID | 3760415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 873536 |
End bp | 874324 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637785519 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_391071 |
Protein GI | 78485146 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.0247033 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTTTAT TGGCGATTGG TATTGAATAC CAAGGCACCG CTTATTGTGG TTGGCAGCAT CAGAAACATT GCGATTCTGT TCAGCAACAA CTTGAAAAGG CATTATCGTA TATCGCTGAC GAACCAATTG GTTTGAATTG TGCGGGTAGA ACCGATACAG GTGTGCATGC GATTGGGCAG ATCGCGCATT TTGAAACGAA TGCCAGTCGG CCGGATAAAG CATGGATTCA AGGCGTTAAC ACCCAGTTAC CCAATGACAT TCGGGTAACA TGGGTGAAAC CGATGCCAGA GGATTTTCAC GCACGGTTTT CTGCTGTTGC CCGGCAATAC CGTTATGTCA TATTTAATCG ACCCGTTCAT TCTGCCATTT TAGCCAATCG TGTGACTTGG GAGAATCGTC CTTTAGATGT GAAAAAAATG CATGCCGCTG CTCAGGATTT ATTGGGTGAA AATGATTTTT CATCTTTTCG CGCAGCGGGT TGCCAAGCCT CTCACGCCAA TCGTAATGTA CAGTATTTGC AGGTGTCACG CCAAGGCAAT TTTGTCTTTG TTGATATTCA AGCCAATGCT TTTTTGCACC ATATGGTTCG AAACATTGTC GGTACCTTGT TGGAGGTGGG GCGATTGGAC AAACCCGTTG AATGGGTATC GGAGTTGCTC AAGAAGCAAG ACCGAACTCA AGCCGGCATG ACAGCGCCAG CGGCAGGGTT GTATTTTGTG AATGCACTGT ATCCGGAATC GTTCGAACTA CCACGAGTTG TTTTGGATGA ATTACTTTGG CAAGCTTAA
|
Protein sequence | MTLLAIGIEY QGTAYCGWQH QKHCDSVQQQ LEKALSYIAD EPIGLNCAGR TDTGVHAIGQ IAHFETNASR PDKAWIQGVN TQLPNDIRVT WVKPMPEDFH ARFSAVARQY RYVIFNRPVH SAILANRVTW ENRPLDVKKM HAAAQDLLGE NDFSSFRAAG CQASHANRNV QYLQVSRQGN FVFVDIQANA FLHHMVRNIV GTLLEVGRLD KPVEWVSELL KKQDRTQAGM TAPAAGLYFV NALYPESFEL PRVVLDELLW QA
|
| |