| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0639 |
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| Symbol | |
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| ID | 3760478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 715004 |
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| End bp | 716713 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637785352 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_390909 |
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| Protein GI | 78484984 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGATT CTAAAGCGCA ATTTCACCAT CTTTGTTTAC GCACTCTAGT GCTGATTCCT
TTGGTTTTGT TGATCGGTTG TGGTGCGGAA ACGGTTAAAA GAGAGCCGTT GGCCCCGCCC
GTTTCTGAAA AGTTTGAAAT TAAAGGGCAT TTAGAGCCGA AAGCGGAGAT GAAAGATAGG
GTTGACGGCC CTTCGAAGAT TCCTGACCTG GTAACGGTGG ATGCGATTAA TATCAATCCT
GCCAAGCAAA CCGTTCAAAA ACTCTACAGT GTGTCGGCCA TTGAGGTTCC AGTGGCGGAC
TTGTTGTTTA ATCTGGCAAA GGATGCAGGT AAGCAATTGG ATTTATCAGC CGACGTGCAA
GGCTTGGTGA CCATTAATGC CATTAACCAG CCGCTGGAAA GCATTATGGA GCGTATTGCC
GATCAAGTAG GGGCGACTTA TGAAATTTCA TATGGCACTA TCCATATTAA GTTAGATAAA
CCGTACTGGA AAAGTTATGA GATTGATTAT GTCAATGTAA TTAAAAACAT CAAAGACCTG
ACCGTGATGA AAATGTCAGT GGGGAATGTG TCAAAAATTA ACAATAATAA TGCCAACCAA
GCGAGTGAAT TCACTTTAGA ATCGTCAGCA ATTCATGACT TTTGGGATGC TTTACAATCT
AATATTGCTT CCATGGCAAG ACTTGACCCA CAAAAGGTGG AGCGCGATAA AAAACAAATA
ACGCTGCCGA CTGATAATGA TGCCCGTGCA CAATTGTCTT CAGCTTCAAA GTCTCGTAAA
CAGTTTCAAA ATGTTGTTGT GAACCGAGAA GCGGGAATGC TGAGTGTCTA TACCACCGCT
AAAAAACATC AACAGGTTAA AAATTATTTG GATTCCAGTT TAAACCGAAC GAATAAACAA
GTTTTGATTG AGGCGACTGT TGTGGAAGTT GAGTTAAGCG ATCAGTATCA GGCCGGGGTG
GATTGGTCAG CGGTTAACTC AAATTCAGGC GGCTCTTCGG ATATTTCACA AAGTCTGCTT
GGGACAAATC TATCTAAAGA TCCTAACTTC TCTATTAATC TGTCAAGTAT TGGCACTTGG
AACTTTAATA TAGGCATCAA AATGCTTCAG CAGTTTGGCG ATGCTAAAGT GCTTTCCAGT
CCGAAAATTA TGGCCATGAA CAATCAAGCT GCCTTATTAA AAGTGGTGAA TAACGAAGTG
TATTTTACGG TAGAAGTGAA TCGTGAGTCG GCCACCGCGT CCAGTGCCGG GGTGACAACT
TATGAAACCA CTGTGCATAC CGTTCCTGTC GGGTTTATGA TGCATGTCAC GCCTTTTATC
AGTGACGATG AAATTTCATT AAATATCCGT CCGACCTTGT CTCGAATTGT TGGGTATGTC
AATGACCCCA ACCCAGATTT AGCGAGAGAG AATATTGAAA GCAAGGTGCC GATTATTCAA
GAAAGGGAAA TGGACTCCGT GTTGCGCTTA AGAAATCGAC AGACAGCCAT TATTGGAGGA
TTAATCCAAG ACACACATGA TAATCAGCGT CAAGGTGTTC CAGGCCTAAG TGATTTGCCT
TGGATTGGAG ACTTATTTTC TTATCGAGAC GATACGGTTA GTAAGTCAGA GCTTATTATC
TTTATTCGTC CTATTATTGT GACCAATCCG GATGTGGATC ACGGTGATCT TCAAGCGTTT
AAACCTCTTA TGAAGACAAA GACAAATTAA
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| Protein sequence | MLDSKAQFHH LCLRTLVLIP LVLLIGCGAE TVKREPLAPP VSEKFEIKGH LEPKAEMKDR
VDGPSKIPDL VTVDAININP AKQTVQKLYS VSAIEVPVAD LLFNLAKDAG KQLDLSADVQ
GLVTINAINQ PLESIMERIA DQVGATYEIS YGTIHIKLDK PYWKSYEIDY VNVIKNIKDL
TVMKMSVGNV SKINNNNANQ ASEFTLESSA IHDFWDALQS NIASMARLDP QKVERDKKQI
TLPTDNDARA QLSSASKSRK QFQNVVVNRE AGMLSVYTTA KKHQQVKNYL DSSLNRTNKQ
VLIEATVVEV ELSDQYQAGV DWSAVNSNSG GSSDISQSLL GTNLSKDPNF SINLSSIGTW
NFNIGIKMLQ QFGDAKVLSS PKIMAMNNQA ALLKVVNNEV YFTVEVNRES ATASSAGVTT
YETTVHTVPV GFMMHVTPFI SDDEISLNIR PTLSRIVGYV NDPNPDLARE NIESKVPIIQ
EREMDSVLRL RNRQTAIIGG LIQDTHDNQR QGVPGLSDLP WIGDLFSYRD DTVSKSELII
FIRPIIVTNP DVDHGDLQAF KPLMKTKTN
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