| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0615 |
|---|
| Symbol | |
|---|
| ID | 3760337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 691132 |
|---|
| End bp | 691938 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637785328 |
|---|
| Product | RNA methyltransferase TrmH, group 1 |
|---|
| Protein accession | YP_390885 |
|---|
| Protein GI | 78484960 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0565] rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0000217405 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAAG ATTACAGAAC GCACTCAAAT TTAGCAAAGA TTAAAATTGT CATGGTGGAA
ACCTCTCATC CAGGCAATAT TGGCGCCGTT GCAAGGGCAA TGAAAAACAT GGGATTAAGT
CAATTAGTCC TAGTCAACCC CAAAGACTTT CCGAGTCAAG TTGCTTCTGC ACGTGCGTCA
GGTGCAGCGG ACGTTTTAAA TGACGCGAAA GTTGTTGAGA CGCTAGAGCA AGCTGTTGCC
GATTGTAAAC TGGTTGTCGG CGCCAGTGCA AGGCTCAGAA AAGTTTCGTG GCCGCAGCTG
GATGTGCGTC AAACGGCTGA ACTGGCTATG GAAACCGTTG GGCAGGAGGA CGAAGATAAT
CAAGTCGCTA TTTTATTCGG ACGAGAAGAT TCGGGGTTAA GTAATGCTGA GCTGGATAAA
TGTCATTATT TAGCGCATAT TCCAACGAAC CCTACGTACA GTTCACTTAA TATTGCGGCG
GCGGTTCAGG TTTTTGTTTA TGAGCTACTG ATGGCCACGG ACATTAAAAG TGTTCATGAA
GCAGAGGGCT ATCGCCATAA GTTAGCCAGT TCCGACCAGA TGGAAGGGTT TTATGATCAT
TTGTATCAAG CACTACAGGA TATTGAATTT TTAGATCCGA CAAAAAATGC ACGCTTTATG
CGAAGAATGC GACGTCTGTT TAATCGAAGT CAGTTGGATG TGAAAGAAAT TGATATTTTA
CGGGGTGTTT TGACGGCCGC ACAAAGACAA ACAAAACAAT TGGACACTTA TCGACAACAA
GCGTCGTTAT CAAAAGAAGA GTCTTGA
|
|---|
| Protein sequence | MIEDYRTHSN LAKIKIVMVE TSHPGNIGAV ARAMKNMGLS QLVLVNPKDF PSQVASARAS
GAADVLNDAK VVETLEQAVA DCKLVVGASA RLRKVSWPQL DVRQTAELAM ETVGQEDEDN
QVAILFGRED SGLSNAELDK CHYLAHIPTN PTYSSLNIAA AVQVFVYELL MATDIKSVHE
AEGYRHKLAS SDQMEGFYDH LYQALQDIEF LDPTKNARFM RRMRRLFNRS QLDVKEIDIL
RGVLTAAQRQ TKQLDTYRQQ ASLSKEES
|
|---|
| |