| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0405 |
|---|
| Symbol | |
|---|
| ID | 3761186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 456260 |
|---|
| End bp | 457111 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637785116 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_390675 |
|---|
| Protein GI | 78484750 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.759979 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACT TATTAAAATT TTCCAAAATG CAGGGCTTAG GCAATGACTT TATGGTGATT
GACGGCACGC AAGAAACGAT TACGCTTTCG ACAGAAGAAA TTCGTTTTTG GGCAAATCGT
TATTTTGGCG TGGGGTTTGA TCAGTTGCTC ATGGTGGAAA ATTCAGCGCA GGGCGATGTG
GATTTTCGTT ATCGTATTTT TAATGCCGAT GGTTCGGAAG TGCAACAGTG CGGCAACGGT
GCGCGTTGTT TTGCCAAGTT TGTCTATGAC AAAGGCTTAA CCGATAAAAC TGAAATACGG
GTGGAAACGG CGTCGGGCAT GATTGTTTTG TACATTACCG ACCAAGGTTG GGTGCGTGTG
AATATGGGCG CGCCGAATTT TTTACCGGAA GCTTTGCCGT TTGATATGCC GCTGGAGTCG
GAACAATATG AATTGGATGT TGACGGAGAG CGCTTTGAAA TTGGTGCCGT ATCGATGGGG
AATCCGCATG CGGTGTTACG TGTGGCCGAT TTAGGCGCCG CGCCGGTCGC AGAAGTAGGC
GAGAAAATTG AATCGCACCG TCTTTTTCCG GAAAGAGTGA ATGTCGGGTT TGCTGAAACG
TTGGATCGTC AGCACATCAA GTTACGTGTT TATGAGCGTG GCGCAGCCGA AACGTTGGCC
TGCGGCACCG GAGCTTGCGC GGCGATGGTT GTGTTGAGAA ACCTTGGTGA GGTGGATGAT
GTGGTAACCG TGTCGTTACC TGGAGGCGAT TTAGAAATTG AATGGAATGG CGATAAAAGC
AGTCCGGTTT GGATGACTGG ACCCGCTGTT CATGTGTTTG AAGGGGAAAT TGCAAGAGGA
GTACCTGCTT AG
|
|---|
| Protein sequence | MTNLLKFSKM QGLGNDFMVI DGTQETITLS TEEIRFWANR YFGVGFDQLL MVENSAQGDV
DFRYRIFNAD GSEVQQCGNG ARCFAKFVYD KGLTDKTEIR VETASGMIVL YITDQGWVRV
NMGAPNFLPE ALPFDMPLES EQYELDVDGE RFEIGAVSMG NPHAVLRVAD LGAAPVAEVG
EKIESHRLFP ERVNVGFAET LDRQHIKLRV YERGAAETLA CGTGACAAMV VLRNLGEVDD
VVTVSLPGGD LEIEWNGDKS SPVWMTGPAV HVFEGEIARG VPA
|
|---|
| |